Fish Transcriptome and Expression Database

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ecological fish

G161475

Basic Information

Item	Value
gene id	G161475
gene name	NA
gene type	non-coding
species	bowfin (Amia calva)
category of species	ecological fish

Chromosome Information

Item	Value
chromosome id	CM030143.1
NCBI id	CM030143.1
chromosome length	20516281
location	20438468 ~ 20438673 (-)
genome version	AmiCal1_2021_bowfin_Genome

Sequence

>TU203248
AGCTGTAGTTTCTAGGGGATTTCCCAAACTCAGATCACATGCCCTGGCCTGGCCTGTTACTCACGGCTCTCATAAACGATCTCATATGATGATTCTGTTGGGTTTTATTATCGCAGGGTGTGTAGATACAGCAAGACTACAGACAAATATACTAAAATTGTGCTTGTTAGTTTCAGTTGGAAATTTTTAAACTTCACTTATGAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU203248	True	206	lncRNA	0.39	1	20438468	20438673

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
AMCG00001947	NA	coding	downstream	27011	20406331 ~ 20411457 (-)
AMCG00001948	NA	coding	downstream	46142	20363308 ~ 20392326 (-)
AMCG00001943	tarbp1	coding	downstream	76017	20347992 ~ 20362451 (-)
AMCG00001933	NA	coding	downstream	154966	20263404 ~ 20283502 (-)
AMCG00001938	LOC106611227,LOC106589746	coding	downstream	307474	20101294 ~ 20130994 (-)
AMCG00001949	smoc2	coding	upstream	4704	20443377 ~ 20468386 (-)
G161391	NA	non-coding	downstream	212549	20225657 ~ 20225919 (-)
G161346	LOC107739892	non-coding	downstream	345123	20092113 ~ 20093345 (-)
G161302	NA	non-coding	downstream	980726	19455124 ~ 19457742 (-)
G161206	NA	non-coding	downstream	1353492	19084112 ~ 19084976 (-)
G161165	cript,LOC107582781,LOC107728714	non-coding	downstream	1536750	18899147 ~ 18901718 (-)
G161471	if3ei,eif3l,LOC106576896	non-coding	upstream	37255	20475928 ~ 20478231 (-)
G161480	NA	non-coding	upstream	39635	20478308 ~ 20478719 (-)
AMCG00001945	NA	other	downstream	90963	20340425 ~ 20347505 (-)
G161153	NA	other	downstream	1587584	18835782 ~ 18850884 (-)
G160925	mta3,LOC105904126,LOC106516625,LOC107749351	other	downstream	2527615	17908754 ~ 17910853 (-)
AMCG00001863	LOC105006094,LOC104951035,LOC101160874,LOC106578938	other	downstream	2573089	17860139 ~ 17865379 (-)
AMCG00001865	NA	other	downstream	2628371	17808018 ~ 17810097 (-)

Expression

Co-expression Network