AMCG00001995


Basic Information

Item Value
gene id AMCG00001995
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 29548 ~ 30540 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001995
ATGAACCTGTTCCGGCTGGTGTGTCGTCACAAGACGACTCTGGCAATTGGGGTGATTTCCCTGTTTGCAGTGGTCCTGCTCTATCTGGCCAAGTGCACCTCCGAAACAGGGTCCTCACCCTACCGATTCCAGCCTCACTCTGAGATGCGTCCTCCGCACCAGGAGGCCCAAGCTAAGGTCCTGACGGCCTTCTTGGTGGTTCTCATAACCACAGGGCCCAAATACACCGAGCGGAGGAGCATCATCCGGAGCACCTGGCTGGTCAAGCATGACTCTGATGTCCTGTGCATGTTCGTGGTCGGGACTGAGGGCTTGCCTCCTGAAGATCTCCAGAACCTGAGCTCGGAGAACGCCCGGCACCATGACCTGCTGCTCCTGCCGGATTTGAAAGACTCCTATGAGAACCTCACCCTGAAGCTCCTGCACATGTACTCCTGGCTGGATCAAAACGTGGACTTCAAGTTTGTCTTAAAAGCAGATGATGATACTTTTGCCCGGTTGGACTTCATCAAAGAAGAGCTGCGGTCGAAAGAGCCCAAGCGATTATACTGGGGCTTCTTttctgggagagggagagtgaaatCTGTTGGCAAATGGAAGGAAAGCACCTGGGCCCTGTGTGATTATTATCTGCCGTATGCCCTTGGAGGAGGCTACATCCTGTCCTCAGACCTGGTGCACTATGTGCGGATAAATGCGGCTTATCTGAAAGTGTGGCAGAGCGAGGACGTCTCTCTGGGGGCCTGGCTGGCCCCAGTGGACTTACGACGAATACACGACCCTCGCTTCGACACAGAGTACAAATCCCGGGGCTGCAACAACAAGTACATCGTTACGCACAAGCAGAGCCTCGAGGACATGCTGGAGAAGCACCAGACCCTGCTGAAGGACGGCCGCTTGTGCAAGGAAGAAGTTAAACTGCGCTTATCGTACGTGTATGACTGGAACGTCCCCCCCTCTCAGTGCTGTCAGCGGAAAGATGGCATCCcctga

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008378 galactosyltransferase activity molecular_function

KEGG:

id description
K00734 B3GALT6; galactosylxylosylprotein 3-beta-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001995 True 993 mRNA 0.55 1 29548 30540

Neighbor

gene id symbol gene type direction distance location
AMCG00001997 NA coding upstream 1967 25438 ~ 27581 (+)
AMCG00001998 LOC104943579,LOC101075650 coding downstream 26728 57268 ~ 71871 (+)
AMCG00002001 NA coding downstream 224772 255312 ~ 263137 (+)
AMCG00002002 NA coding downstream 237268 267808 ~ 275768 (+)
AMCG00002000 ddx19,LOC108411521,LOC107699345,LOC103386132,LOC107556002,LOC108255077 coding downstream 249667 280207 ~ 289733 (+)
AMCG00002005 cpsf3l coding downstream 267971 298511 ~ 316562 (+)
G120193 ube2j2,LOC107599097 non-coding downstream 69579 100119 ~ 103273 (+)
G120201 NA non-coding downstream 92002 122542 ~ 123168 (+)
G120254 NA non-coding downstream 637199 667739 ~ 668057 (+)
G120494 NA non-coding downstream 1843672 1874212 ~ 1876528 (+)
G120516 NA non-coding downstream 1867394 1897934 ~ 1955361 (+)
AMCG00002019 NA other downstream 652130 682670 ~ 992764 (+)
G120518 NA other downstream 1893482 1924022 ~ 1940816 (+)
AMCG00002076 NA other downstream 2821614 2852154 ~ 2854127 (+)
G120742 NA other downstream 2926368 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 3503274 3533814 ~ 3542177 (+)

Expression


Co-expression Network