AMCG00001998 (LOC104943579,LOC101075650)


Basic Information

Item Value
gene id AMCG00001998
gene name LOC104943579,LOC101075650
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 57268 ~ 71871 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001998
ATGTGCTTGCTGCTCGTAACAGCTCTGTATGCGACGCCACATGCAGCTACTTCAGAAACGCCTCTTCCGGAGATTCACCGTGTGGACCCTCATGGATCTTGGCTGGATTTTGTAAAGCGACCTGTGGGCAACTTCCCAGGGAAGTGCAGAAAGAGGAAAAGGCCTCTACCCGGACCCCCCGGACCTCCTGGACCCCCAGGGCCACCAGGACAACCTGGAGCTCCAGGAGCTGAAGTGACTCAGGAGGTTTTGCTCAAGGAGTTCAGACATATGATCAAAGAAGCCACAGAGAGACGGGCGTCCACAGACTGCCAGTCCAGCCCCTGCCCCACACCCCCTCCTCTCATCCTGCTTGATGGCATCACCTCCTACAGAAGAATAGAAGAAGCTTTCCACTGCAAACTGAAAGGACCCATCACTGTGGACAAGAAAACACTGGTTGAATTGCAGATCTTTCAGACTGTAAACCacagtgaagtgaagaaaagcaaGACCCAACTGAGAGCGAGAGACAACATGCGAGTCCTGATCTGTATCGAGTCCCTCTGCCACCGATATACGTCCTTAGAGATGATAGTTGGGTTTGAAAGCAACAGTAAGATATTCACAGTGTATGTCCATGGATTACTGGAACTGCAGGCGGGACAGTACACTTCTATATTCGTGGACAACGCAGCCGGGGCGTCCGTCACAATACAGAGTGGCTCAGATTTCATGGGCATGCTCCTGGGCTTGTAG

Function

NR:

description
PREDICTED: adipolin-like

GO:      GO:0044699

KEGG:

id description
K21410 C1QTNF12, FAM132A; adipolin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001998 True 738 mRNA 0.52 7 57268 71871

Neighbor

gene id symbol gene type direction distance location
AMCG00001995 NA coding upstream 26728 29548 ~ 30540 (+)
AMCG00001997 NA coding upstream 29687 25438 ~ 27581 (+)
AMCG00002001 NA coding downstream 183441 255312 ~ 263137 (+)
AMCG00002002 NA coding downstream 195937 267808 ~ 275768 (+)
AMCG00002000 ddx19,LOC108411521,LOC107699345,LOC103386132,LOC107556002,LOC108255077 coding downstream 208336 280207 ~ 289733 (+)
AMCG00002005 cpsf3l coding downstream 226640 298511 ~ 316562 (+)
AMCG00002009 NA coding downstream 262565 334436 ~ 398486 (+)
G120193 ube2j2,LOC107599097 non-coding downstream 28248 100119 ~ 103273 (+)
G120201 NA non-coding downstream 50671 122542 ~ 123168 (+)
G120254 NA non-coding downstream 595868 667739 ~ 668057 (+)
G120494 NA non-coding downstream 1802341 1874212 ~ 1876528 (+)
G120516 NA non-coding downstream 1826063 1897934 ~ 1955361 (+)
AMCG00002019 NA other downstream 610799 682670 ~ 992764 (+)
G120518 NA other downstream 1852151 1924022 ~ 1940816 (+)
AMCG00002076 NA other downstream 2780283 2852154 ~ 2854127 (+)
G120742 NA other downstream 2885037 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 3461943 3533814 ~ 3542177 (+)

Expression


Co-expression Network