Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00002002 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030136.1 |
| NCBI id | CM030136.1 |
| chromosome length | 27394605 |
| location | 267808 ~ 275768 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0009451 | RNA modification | biological_process |
| GO:0016853 | isomerase activity | molecular_function |
| id | description |
|---|---|
| K06173 | truA, PUS1; tRNA pseudouridine38-40 synthase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00002002 | True | 444 | mRNA | 0.60 | 4 | 267808 | 275768 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00002001 | NA | coding | upstream | 4671 | 255312 ~ 263137 (+) |
| AMCG00001998 | LOC104943579,LOC101075650 | coding | upstream | 195937 | 57268 ~ 71871 (+) |
| AMCG00001995 | NA | coding | upstream | 237268 | 29548 ~ 30540 (+) |
| AMCG00001997 | NA | coding | upstream | 240227 | 25438 ~ 27581 (+) |
| AMCG00002000 | ddx19,LOC108411521,LOC107699345,LOC103386132,LOC107556002,LOC108255077 | coding | downstream | 4439 | 280207 ~ 289733 (+) |
| AMCG00002005 | cpsf3l | coding | downstream | 22743 | 298511 ~ 316562 (+) |
| AMCG00002009 | NA | coding | downstream | 58668 | 334436 ~ 398486 (+) |
| AMCG00002014 | NA | coding | downstream | 292322 | 568090 ~ 569052 (+) |
| AMCG00002015 | NA | coding | downstream | 396516 | 672284 ~ 676496 (+) |
| G120201 | NA | non-coding | upstream | 144640 | 122542 ~ 123168 (+) |
| G120193 | ube2j2,LOC107599097 | non-coding | upstream | 164535 | 100119 ~ 103273 (+) |
| G120254 | NA | non-coding | downstream | 391971 | 667739 ~ 668057 (+) |
| G120494 | NA | non-coding | downstream | 1598444 | 1874212 ~ 1876528 (+) |
| G120516 | NA | non-coding | downstream | 1622166 | 1897934 ~ 1955361 (+) |
| G120536 | NA | non-coding | downstream | 1720659 | 1996427 ~ 2005914 (+) |
| G120563 | NA | non-coding | downstream | 1897702 | 2173470 ~ 2174499 (+) |
| AMCG00002019 | NA | other | downstream | 406902 | 682670 ~ 992764 (+) |
| G120518 | NA | other | downstream | 1648254 | 1924022 ~ 1940816 (+) |
| AMCG00002076 | NA | other | downstream | 2576386 | 2852154 ~ 2854127 (+) |
| G120742 | NA | other | downstream | 2681140 | 2956908 ~ 2959475 (+) |
| AMCG00002098 | NA | other | downstream | 3258046 | 3533814 ~ 3542177 (+) |
