AMCG00002019


Basic Information

Item Value
gene id AMCG00002019
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 682670 ~ 992764 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002019
ATGCAGGACAACGACACGGACACGGCGACACTTCGCCTGTGCTCTCCGACAGATCCGATCAAAGCACTGATCCACAGATCTCTGCAGGCCAAGGAATTTGCTTACTGCCCTTACAGCAAGTTCAGAGTCGGGGCTGCTTTAATGACCAGCGACGGGAAGGTCTTCATAGGATGCAATGTTGAAAACGCTTGCTACAACCTGGGGGTGTGTGCCGAGAGGACAGCGGTTTTGAAAGCTGTTTCAGAGGGTTACAAGAGTTTCACCGCAATTTCCATCGCCAGaTCATCCGGCCCAAACGACATGGGCAGCAGCTCATCCACCGTCATCTGCACTGGCGTTCCTGTGCCGGAGAGCCTGAGAGCGCAGGACACTGTGGAGGACCAGCCGGTGCGGGAGCAGCTTGAGGAGtctgtggaggagatgaaggaggAGTCTGTGGAGGAGATGTAG
>TU150678
AACACAGCCTGCGTCCGCACCGTGCGCTTGTCTCACGGGCGGCATTGCGGGAGtgcagagacagagaagagCAGAGATGCAGGACAACGACACGGACACGGCGACACTTCGCCTGTGCTCTCCGACAGATCCGATCAAAGCACTGATCCACAGATCTCTGCAGGCCAAGGAATTTGCTTACTGCCCTTACAGCAAGTTCAGAGTCGGGGCTGCTTTAATGACCAGCGACGGGAAGGTCTTCATAGGATGCAATGTTGAAAACGCTTGCTACAACCTGGGGGTGTGTGCCGAGAGGACAGCGGTTTTGAAAGCTGTTTCAGAGGGTTACAAGAGTTTCACCGCAATTTCCATCGCCAGGTAATGCTTCTCTCGCAGTTCCCTCTGTAGCCTGTTTACACTGCATGTGTCATTCGGGCATCGCAGTTCAGAGACGTGCCTTTGCGCTGGGTTTCCCATTGCAGGTGTCCTGCTCGGCTGCTCCTTCTCACATTATTATTGGTCGTGCTGATGAATTCATGCCTGTCTTAGAGATGCCCAGTTTCAGTGGAAAGTACTTCCCACCCTTCAATTAAAACAGCACTCTTCTGTGATTATTTGACTTGAATGAATATGGTTCAGTAAATC
>TU150681
gagggagagagggacggagggagagggacagagggagaaagagggatggagagagagggagagggacggATGGAGGTCTTTTTCTTGCCATGCACGCATTTATTTGGCCAGGCAGCACTGAATTGTGTCTGAGTTGCGCTGCAGGAAACCCTGAAGTGTGTCAGTGACGCTGGGCTGCTCTagtgagctgtgtgtgtattgcgTGTTcgtatgctgtgtgtgtgcgttcaTTTCCTTTCCATAGTGGCGTTCCTGTGCCGGAGAGCCTGAGAGCGCAGGACACTGTGGAGGACCAGCCGGTGCGGGAGCAGCTTGAGGAGtctgtggaggagatgaaggaggAGTCTGTGGAGGAGATGTAGGAGGAGtctgtggaggagatgaaggaggAGCCTGTGGAGGAGCctgtggaggagatgaaggaggagtctgcactgcacagccattttcagatctctccagagatgttcagtcgggttcaagtctgggctctggctgggccactcaaggacattcacagagttgtcctgtagccactcctttgttatcttggctgtgtgcttagggtcgttgtcctgttggaagattaaccttcgccccagtctgaggtccagagcactctggagcaggttttcatcaaggatgtctctgtacatttcTGCATTGATCTTTCCCTCGAttctgactagtctcccagttcctgccgctgaaaaacatccccacagcatgatgctgccaccaccatgcttcactgtagggatggtattggccaggtgatgagcggtgcctgttTTCCaccagacatgagttcaatctttgtttcatcagatcagagaattttgtttctcattgtctgagagtccttcagatgccttttggcaaactccaggtgggctgtcatgtgagtgctgcagagatggttgttcttctggaaggttctcctttctccacagagacacgctggagctctgtcagagtgaccatcgggttcttggtcacctccctgactaaggcccttctcccccgatcactcagtttggccaggcggccagctctaggaagagtcctggtggttccaaacttttTCCTTTTACGGATGAtagaggccactgtgctcattgggaccttcaatgctgcagacaatcttgtctcggaggtctacagacaattccttggacttcatggcttggtttgtgctctgacatgcacaaactgttaactgtgggaccttatatagacaggtaaACAATGCAAATCGTATTATGGTTGAAAGTGTTCATGTTCGAGTCACTGGTTTCTCATCttattcagatgtttttgtatattttattttgaaaaagtaatAGAACTCTTAGTGTTTAGTTTGGATATGGAGAGCAGTGACACCATCTAGTGAAATATTCttgaacaatttaaaatctccttttctgttttccctTTCTGGGGAGTGAACTCTGTCCCTTTGAATGGACCATCTGCTGGACACGACCTTCCTCTGGACTGGTGTCAGATGGACAGGGTTAGAAATGACCATTGACTGCTGCCAGGCTGGCCTCTGTGCTCCCCTCGTTTCAGTGTGTCTTTAGTGACCGGGGTCTAAAGGTGCAGCAGTTGACGCACCAGTCTGTGCATCGGTGACTGCTAACCTGTTCAGTCATTCAGCCAGGAAGGACACAACCTTTTATTAGACACGCTGAGCACAGGCTGAACTGTCCATTTTGCAAGCGGTGAAAAGGgtcctgaaccttttcaccctggaacagaggagactacatgaggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagaggcgtcacaatctggaatacactacccagtgatgtggctgaagagacaatttgggaacattcaaaaacagaatggataggatccttggatcacttagttattaatagacaccaaacgagcatgatggggcgaatgacctcctctcgtttggacactttcctatgttcttatgtcctCAGATTCAAATCCAGCCAAAATGCACCCATTTCTGAATGAGACCGAATGAACTGAAGTAGTAACGGCACACAAagcacaacacagacagaccccGAGCGGAACAAGATCATCATGTGACTTCCCTTACAGACGCCCCTCAATGGCTTTCTGAATGTCAGGAGAAGCCAGGTTTACTGTCTGTGTTGAAAAGCTGTGGCAGCTCCTCCCAAATGAACCTGGTGCCAAAGTGGCTTGCAAGCTGAAGACTGGGTGGACAGGTTTATGTTTCGGTTTGCAATTTCGGTGAGCGCCTTAGTGTCGGTCGAGTGCTTGTGGGAGTCGAGGTGTTTGATGACTCCAGGGAAAGGCGGTCGGTCCTCGGGGTGCCACATCCAGCACTGCTTCATCAAGTCATACCTGGAGGGGAAACAGAAAAGCCAAACAGGAGGCTGGAGACATCAGTGGCAGCCTGCATTCGGGCTGCACTTTTGAGTCTCCGTCAGCCttttcaaatacagtacattgaTGCGGAGGCAGCAGTATGACAATGGTTTCAGGGCTAGTGGCTGAGCATGAGGGATTTCATGCATGAAAATGAGTCGTAAAGGCTTTAGACAGGGGTCTCTAACTCAGTTATTGgagttctcaattacttaattaaccttatatatttgttttaaatcagttagacatttgatattgttttaagGTCTAGAAACAATctgaaattgtttaaatatgtaaaatgtgtgtacTGTCATGTACAGTGTGTAGAGAAGTATCACATGTATTCATCATTCAGCTCATCAGAAGCCCACCGAACAGTACAGAACATGTGTCAGCCGCTGCTTCAGTGATCCTGCCCACAGTTTGTCTTGTAGTTGGACTGCGACGCATTCAAAGGCATGCTACAGTCATACAATAGGGACTTCTGATGTACACAGAGCAGTCATGTCACTCTGAACACGCAGGGAACATGTCCTGTCATTGGCTTGTTGCATTCTGTGCGATCGTGTGCCGTCAGTGACGCTTTGCTTTGTCTGTTGATCTGG

Function

GO:

id name namespace
GO:0009972 cytidine deamination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002019 False 450 mRNA 0.56 4 682746 693983
TU150678 False 624 TUCP 0.51 2 682670 684326
TU150681 True 3070 TUCP 0.48 2 693622 992764

Neighbor

gene id symbol gene type direction distance location
AMCG00002015 NA coding upstream 6174 672284 ~ 676496 (+)
AMCG00002014 NA coding upstream 113618 568090 ~ 569052 (+)
AMCG00002009 NA coding upstream 284184 334436 ~ 398486 (+)
AMCG00002005 cpsf3l coding upstream 366108 298511 ~ 316562 (+)
AMCG00002000 ddx19,LOC108411521,LOC107699345,LOC103386132,LOC107556002,LOC108255077 coding upstream 392937 280207 ~ 289733 (+)
AMCG00002027 NA coding downstream 16458 1009222 ~ 1028565 (+)
AMCG00002032 epha8,LOC107565732,LOC107654383,LOC107582396 coding downstream 172097 1164861 ~ 1179295 (+)
AMCG00002033 epha8,LOC107582396,LOC107654448,LOC107756634 coding downstream 209486 1202250 ~ 1228078 (+)
AMCG00002034 NA coding downstream 318433 1311197 ~ 1317051 (+)
AMCG00002040 NA coding downstream 393904 1386668 ~ 1388576 (+)
G120254 NA non-coding upstream 14613 667739 ~ 668057 (+)
G120201 NA non-coding upstream 559502 122542 ~ 123168 (+)
G120193 ube2j2,LOC107599097 non-coding upstream 579397 100119 ~ 103273 (+)
G120494 NA non-coding downstream 881448 1874212 ~ 1876528 (+)
G120516 NA non-coding downstream 905170 1897934 ~ 1955361 (+)
G120536 NA non-coding downstream 1003663 1996427 ~ 2005914 (+)
G120563 NA non-coding downstream 1180706 2173470 ~ 2174499 (+)
G120564 NA non-coding downstream 1181823 2174587 ~ 2176442 (+)
G120518 NA other downstream 931258 1924022 ~ 1940816 (+)
AMCG00002076 NA other downstream 1859390 2852154 ~ 2854127 (+)
G120742 NA other downstream 1964144 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 2541050 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 4226066 5218830 ~ 5226656 (+)

Expression


Co-expression Network