AMCG00002027


Basic Information

Item Value
gene id AMCG00002027
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1009222 ~ 1028565 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002027
CTCTGCGCAGTGTCTCAGGATGGCGTGAGCTCGGcattttgaagatatctttattGTTCTCATTAATTTGTCCACGGATGCAGTTTAAATAAAGAGCTGTGCGGTTTGAATCCGACTCAAGGTGACCCATGGAGCTGCCCAACTACAGCCGGCAGCTGATGCAGCAGCTGCACGCACTGAGGAAGGAGGGCCAGTTCTGCGACTGCACCATCCTTATCGGCACAGTGCCCCACAAGGCCCACAAGCTGGTGCTGTCTGCTGCCAGCCTGCTCTTCAAGTCCCTACTGGAGAGCTCTGACACCATCTCCATTGACCCGTCCGTCGTCACCTCCGCGGAGTTCTCCAGCCTCCTGGAGATGGTCTACACGGGCAAGCTGCCCCCCGGTAAGCACAACTTCACCAGGGTCATCTCGGCGGCGGACAGCTTGCAGATGTTCGACATGGCAGTCAGCTGCAAGAACATCCTCAACCAGCTCATGAAGCCGCCAGCCACCACGGCAGAGCCCCCCGTTAAAGTCCCCCGCTTGGAGCCGGAGGCGGACTCCAGGGTCCCTGTCGAAGAGCAGGTTTCTGGGCCTGTGGCTGATGAGATGGAGGAACACCAGGAAGAAGCGCCCGTATGTAGGCCGAAGGAGCCCCTTGATCGACCCAGGCGACCGGCTGAGAATGTACCCAAGAATGGCGGCGGTCCCGTTCCCAAACACACTCTTTCTGGTCCACTTCACGAGGACAGTGAGAAGGACCTGGCGTTCTTGCTTCAGAGCAAAAACAGGATTGCCGAAGCGATCGGAGACGTGCAGCCGCTGATCAGAGTGGTGGAGAAATGGGAAGCGATTTCAAGGGCGGAGAAACAGATTATTTTAGACTGCTGCCAGGGCGATCTGGTGGGGCCCAATATTTTCCACAGGCTGCTGAGCAGTGTGACCAGCGAGAAGCAGCTGTCCGCCCAGACTGTGCTCACCCTGCTGGAGCTCTTCAGAGAAGTCAGCCCCCGCCTGGCCCCCGTGCTGCACAAAACGTCTCGCAGGGACGAGTCCAGAGATCCGGTTCCTGCAGAGAGGACGCTGTCTCGCTTGCTTGAGGAGAACGCCGAGCAGCTGATTGCCAGCGTCCCTCACCTGAGTCCTGTTGTGGAGAGCTTGGAAGCTGAAGCCAAAGGCCTTCTGACTGACATAGAGAAGCAGGTCATCCTTGGCTGCTGCAAAGGGGCGTCTGCCAGCGAGGCCATGGCGGCTCTGCTGAGTAAAGTGACGCTGGAGAACGCGGTGGACGGGAGTAGGTTGCTGAAGCTGCTCCACAGCGTCAAGGCCAGCTTCCCCAGCCTGCCTCCCATCCTGGACGCCATCGACGCAGAGTGGGCCTCCATTCAGGGCACAGGTAGGGTCAGTCAATCATCTGGCATGGTTCTGAAGTACACACACAACCACCAGGCCCAGGGACTGCGAGTAACAAGACGCAAACAAACACGGTGGTCTGTCTCCCCAGAACAGAGGAGCCGGGAGGAATATGGAGCCGATCTCTTGAGGAGATATGGGAAGCAGCTCTCTGAGTCCCTCTGTGATGCCAAACCTCTTCTTCCCATCCTGGCTGCGGCTGAGGACCTGCCCTCTGCAGAGCGAGAGTGGCTGAAGGCCTGTCTGGCGGAGGACGGGGGTGTGGACAAGGCGCTGTCcgtggcactggaggagcgatGCATGCAGGCCATGTCAGTGTGGAGACTGCTCCTCAGGGCCAGGTCGGAAATCCCCAGACTGGACCGCCTGATCCAAGACATCAGCAAGGAACCAGAAGATGACCAATTCATCCAGTCAGttcTGGATGTAGAGGAACGGATGCTGGACATCTTATTTAGGCACAGAGATCTGGTGACACAGGTTATCAGTGACCTGGGAGTCTTGacgggcagagagacacagggtgGAGGCTGCCCAGCAGGAGATGTCTTCGAGttcataAGAAGCTGCTCAAAGATGGAAGACCCGGGCGAGGCAGTGAGGACTCTTCTGGACCGGATTCTGGAGGAGAAATCCCTGGCAGCTCAACCTTTCTGCCAGCTGTTGATCATCAGTAAGGAGTCTTTCCCAACAATGCAGCCCTTCATAGAAGAGCTGGAGCAAGCAGAGCGAGAGGGGTGTTGGAAGGAGCCGCTGCAGAAACCCCAGACCctgcaggaggaagaggagggggacgTAGAtgaggaggacgaggacgaggatgAGGAGAAGGATCCAGACGCGGGGGGCGACAAGAAGGGCCCCAAGAAAGCGGGGGTAAAACAGAGCTTCCCCTGCCAGTGGTGCGGCAAGGCCTTCGGGTTCAAGTGCCGCATGGACGTGCATCGGAAGAGGTGCCGTCTGTCCCGGGAGACGCAGCAGAAGTGTCCGCAGTGCCCCGCCGAGCTGCCCACCCCCAAGGCCCTGCAGCTCCACCTCGCCAAGAGCCACGGCAGCCCCCCCcgcaagaagaagaagaaacgcCTCGAACCAGTGACCTGCGACATCTGCGGGAAGACTTTTGCCCACCAGTCAGATATCGACGACCCGTACGACTGCCAAAAGTGCCGCATGAGTTTCGGGTCTCTGGAGGAGCACCGGAAACACATCCAGGAGTCTCACCCCAAAGAGTACCATCCCTGTGTCGTGTGCGGCAAGATCTTCAACACGGCGACCCTGCTGGAGAAGCACATGGTCAGCCACGTGGGGGGCAAGCCCTACAGCTGCGAGATCTGCAACAAGGCCTATCAGCAGCTCTCTGGGTTGTGGTACCACAACCGCACCAATCACCCCGAGGTGTTCGCAGGCCAGAGCCACCGCTCTCTGAAGATCTCCCCATTCCAGTGCTCCTCTTGCGACAAGACCTTCCTTAGCAGCGCCGCCCTCGGCAAGCACGAGAAGACTGTGCATCCAGGCGTCCAGCTCTTTAAGTGCCTGTACTGCCCGGCCTCCTTCCAGACCACTGGGGACCTGCAGCAGCACCTGTGCAGCCGGCACTTCAACCAGGAGGGGGAGGCCTTCGGCTGCGGCCACTGTGACCTGATCTTCCCCCTCcagcaggagctgcaggagcACTACCTCACGCAGCACCCTGGGGTGGGCAACGCAGACGCCCAGCCCTCCACGCAGATGGTGATCCAAACCACGGAGCAGCCCGGAGACCCCGAGCAGCTGATCGCGCTGGACCAGTCTCACATGGCGGGCTCCCAGGTGTACGTGGCGCTGGCCGACTCCCAGGACAACGCCACGGCGCCGGAGATCGTGGCCGTCAACATGGACGACCTGCTGGACGGCACGGTCACCTTCATCTGTGGTGACGCCCAGTGAGAGCTCGTCCCGAGAAGACGCTGATCGGTGGCAGTGCCTCTGTTTTTAAATCCGATGGGAATTAAGTGGTTCGGTCCATTTGAATTTCGGTACCGGTGGCTTTGAAGAAACTATCAGAGTCTGCCAAGTATTAGAAGCTGCTGTCTGGATATTGGGCCTTGAAGGAGAGTTGGTGTTCGTGTTTCAGATTTCCTTCACATTAATGAGTAGCCGCTAgaagatttgtgtttttcctcattGCCGGGACGTTTTGTTCATGTTAGGCACAGACTCTGTCCCAACACATACAGTGTCGAGACGGACGCGGCTCTTCCTGGAGAGACTGTGGCACTGGTggtcttttttccccttctagTGACCGCTGTCTCCCTGGCAGCCCTGTATGTGAGAGACGCTCTTCTATTGAAAAGGCGTTCGGAGGGAAACGGATTCAGAGTACTGTGTGCAAAGTTTGACAGCCATTCCTCTCACTAAGACTGCAACTGTGATGTGGGAAGCGGTGTCTAAGTGTTTTGTGTATTGTGCGTTTAGAGGCCCATGTGTTTTCCCACAGCAGTTGCCATTGAGGAGCACTAGGGCCTGCAATGAATGTGAATGTGCTGAAATGGAAGATGCGATCATCAGGTTTATGACTTTTTGTAATCatgttgtgctgttgtttttgtttgtttcatatctGTGATATCGGTAGTTCGAGtggatgtgtatttattgattctCAGGAGGGCATTATGAAGTACCGCTGTGAAACCCAGCATTCTTGGTTTCATCTGCATTTTAAGGAAGAGGCAGAAATCCAGTCCAGTCGCCCGACAGCAGGGCTACGCTCTGCACAGGTGCCATTCGTGTCACAGAGAAATACGTCTGACTTGCATATGATTAGACTCGCTCCTTCTCAGCAGATATTGTAAAAGAGGAGCAGGTCTGACTGTCAGGCCTTTAAAAGTCCTGGCTCCGAGGTTATTAACGTGAACCTGTGCACTGTCCGATCCGTCTCACTGCTTGACGGTTTTGTGTACGGTGTGTGCCGGCGGGAAGCCAGCTGTGCCGCTTGTTTGGATCAGGAAATGCGAGGTCAGATAAAGCATCAGTCCTTTCTTCATACTATTGTTGCACAGTGATGATTCATGGGTCTGACGATAACAGCATAGTTTTAACAGTGACCTGAGTATACAGCGCTGAATAACAAGCTGACAGTTTTGATCAGATTGACAATGTTATCATCAGGTGTCAGAGCTGACCTTAAATTATCCCTCAACCGGGAGCCTTTTGTTCTAGTGATTTCTGCCCTTCTGTGAAACGCAGCTTTGAGGTGGAGTGTGTGTGAAATGGTAAAGGATGAAGAATGGCTTTTTAAATCCCTCGTTACGGTGTTACTCAAGCGATTCGCATGTGGGCTTTCCCTTGTACTGAAAGATGGAGGTAAAGAATGCAGACGgagaatgtttttcttattgctgttattatgaGCACT

Function

GO: NA

KEGG:

id description
K10512 ZBTB40; zinc finger and BTB domain-containing protein 40

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002027 True 4794 mRNA 0.55 14 1009222 1028565

Neighbor

gene id symbol gene type direction distance location
AMCG00002030 LOC108441403 coding upstream 22839 967777 ~ 986383 (+)
AMCG00002028 NA coding upstream 51849 952521 ~ 957373 (+)
AMCG00002029 usp48 coding upstream 64777 921970 ~ 944445 (+)
AMCG00002025 NA coding upstream 104069 896356 ~ 905153 (+)
AMCG00002024 NA coding upstream 113652 872605 ~ 895570 (+)
AMCG00002032 epha8,LOC107565732,LOC107654383,LOC107582396 coding downstream 136296 1164861 ~ 1179295 (+)
AMCG00002033 epha8,LOC107582396,LOC107654448,LOC107756634 coding downstream 173685 1202250 ~ 1228078 (+)
AMCG00002034 NA coding downstream 282632 1311197 ~ 1317051 (+)
AMCG00002040 NA coding downstream 358103 1386668 ~ 1388576 (+)
AMCG00002041 NA coding downstream 363695 1392260 ~ 1410838 (+)
G120254 NA non-coding upstream 341165 667739 ~ 668057 (+)
G120201 NA non-coding upstream 886054 122542 ~ 123168 (+)
G120193 ube2j2,LOC107599097 non-coding upstream 905949 100119 ~ 103273 (+)
G120494 NA non-coding downstream 845647 1874212 ~ 1876528 (+)
G120516 NA non-coding downstream 869369 1897934 ~ 1955361 (+)
G120536 NA non-coding downstream 967862 1996427 ~ 2005914 (+)
G120563 NA non-coding downstream 1144905 2173470 ~ 2174499 (+)
G120564 NA non-coding downstream 1146022 2174587 ~ 2176442 (+)
AMCG00002019 NA other upstream 16458 682670 ~ 992764 (+)
G120518 NA other downstream 895457 1924022 ~ 1940816 (+)
AMCG00002076 NA other downstream 1823589 2852154 ~ 2854127 (+)
G120742 NA other downstream 1928343 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 2505249 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 4190265 5218830 ~ 5226656 (+)

Expression


Co-expression Network