AMCG00002035 (cldn19,LOC106583106)


Basic Information

Item Value
gene id AMCG00002035
gene name cldn19,LOC106583106
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1329547 ~ 1350758 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002035
TTTTTTGTTCCCAGTGAAGTTTTTATTGCCGTTCAGCCCCCCGAGCACCATCCAGACCCACTGGAGTGTGACAAGAAAGCTATGCGGTCTCTACACAGCCTGCTTCCCAATCCTGACGGCTACTGCACACACTGAGCAAAGCCCTCAGACCAGCTTCCAAGCCTGCAGGTAGGGGATTTCTTAAAGAGACACTGCCGCCCCAAAGCTGGCGCCGGTCTAAATGAAGAGCAGTCCTCCTTTTCGCAGCCTTTTGAATTGCAGGGGAATAAGGGGGACCTCCAAATGACAGAGCTTGCCACGGCCACGAGCGACACAAAGAGGGACTGGCAACTGACTAGAGAGGCAACAAAAAAGGACACCGCAGATTGACTGTGCTCAGTtggttttgttggtttgttgaTTGGTTTGTCTTGTTCAATccttcttttttggggggaactttggtggagagaaaaaaaaaaactttgtgaGAGTTCAAATTAGCTTGATCTTGATAAGGGAGgacttttgtgttttcctttttggtcTGTTAGTTTTCTAATGAAGTGATTGGCTCTGGCGATAATAAACACGGAGGAGTTTTGAGGACTTTCAAGACTTTCAGAACTACAAAGGTGGAAGAGACGACGCACTAGAAGgacaagaggaggaggaggaagaacaattgcttcaaataataattacaaaacacaaacaaacaacagaaatgGCCAATTCTGGCTTTCAGCTCCTGGGTTATTTCTTGGCGTTGGGTGGGTGGATTGGCATCATCTCGACGACAGCTCTGCCCCAGTGGAAACAGTCGTCCTACGCTGGTGATGCCATCATTACGGCTGTGGGGCTGTACGAGGGGCTCTGGATGTCCTGCGCCTCTCAGAGCACTGGCCAGGTGCAGTGCAAGGTCTTTGATTCGTTGTTGTCTTTGGATGTCCACATCCAGACGTGTCGGGCGCTGATGGTGGTCTCGGTGCTCATGGGCTTCATCGCCATCATCGTCAGTGTGGTGGGGATGAAATGCACTAAAGTCGGGGACAACAACCCCATCACCAAGAGCCGGATTGCTGTGTCGGGAGGAATCCTCTTCCTGCTCGCAGGTCTGTGCACGTTGGTTGCCGTGTCCTGGTACGCAACGCAAGTCTCCCATCAGTTCTTTAACCCAAACACACCTGTAAATGCCAGGTATGAGTTTGGCTCGGCTCTGTTCGTGGGCTGGGCAGCCGCCAGTTTGACTATGCTGGGTGGCTCGTTCCTCTGCTGCTCCTGCCCCAACGAGGAGAGGAGAGGGCAGCAGTACTACAGGCAATCCCAGCCCTCCACAGCCAGGGAGGCTGAGTTGTTGAGTGAAAGTAGTTTCCCTGACTGATCAACCCCTGCCTTTTTATCGAAGATTTTCCAAGTTCCACTTACCTTTTCCCGTTTCCTTGTTCCTTCCTAGATTCAAAATTTGGACCCTTATCACTTCACTATAGTTTAAATTTGTGCTCTATAAATAGATGTGTCTGTCAGCATCTGCTATTAAAACTATGAATTCAAGGTTTTCCCCGTCTGCTCATGATTGCCCCACCCATCACCTCCCTGTGATTGAGGactctttttgtgttttattttgtatgacttGATTGAACAGACTCTTATATTGACAATGTGGTCTCAATGCTGCATCTTGTGTGACTAGTAAAGTGTTGTGCGTCTTTTACTGCCTGATGCTTTTATGCCTTTATGTCATGATGTCTAtaattctgattttatttttattggtttggttgattttgttttcttgcaaatgtaCCTGTATATTgacttaaacatgtttttttttctttttcttttaaattgcaGACCAAATGTAAAAAGTTCTCCACCAGACAAGGGGGAGCAGTACTTGTAGTTTGGGAAAGTGAACGCCCCCGTTGGTCATATGCTGTTTAGATTTTGCAACAGACAAGACACTCTCTTTAGGCAAATGTAAAGCtaaatttatatacataaataattaaaaaataaaaataaaagtgcctGCAGATGTAAACCATACCCAAATGGATTTAATTcttacaaaagcaaaaacttGCTCACCCAGAATACATTCACAAACCCTTCATGTCccaaacattgttttttaattctatcTTGCAAAACACCAGAGCAATCTGTTCTTATGTCCACAAGATTCAATTCTGGGACCACTTCCTGTAtactcattttgttttagtggGCAAACAAAGACTGAATTCTTTATTGTAACtgaagttacatttttttttgcacaaaaaCACCAGATATCTAAGTCAGTTTGTGTGGATCCTGCATAAACATCTCCACTTCCACATTGATAAAGACATCCGGAAACCTGTGTACAGAAGCATTAGACATCAGCCCTGAACTGTGTCACTGCAAACCTgtggtgcatttaaaaaatatagtcCATTAATGCAGCAAAGCAATCTATTGACTCCACTGATGTACAAAAGCAACtatagaacacatttaaaaaacaaaatcctacTATAATTGTAATACTAGGTATGTATGGTTGGTTTAACAGCAAAGTTAAAAGGTACCTCATCAGACGTGAAGATTCAACACCCACTGTGTCAATCAACCCCACTTCAGGGCTTTAGAGATCGCTCTTCAAATCCACACATCCTTAAGAccctgggggaaaaaaagatgtAGACCAGTCAAGCAAATAATTAGCACACTTACATTAtacagagctcagctggaacccAAACTAGAAGCTCCTGCAGCCCCTGAGgactggagctgctgcagcagtGTGAGTCGTGTCATATTTCAGGCTTCTCTCCACGCAGGTACGCACTGCTTGCCTTGTGATGAGTTACTGTGTTCAGACGCACCTGTGATCAACTAATACAATCAATAAAGCACAACCATATAAACAAACACCTTCATAAACAGAATGCTGCAATGCTGGTACTTATTCCCATCTCTAAAACTGAGGGCTTGTGGTGGGAAGTACACATTATGGATTAATTTGCAATGTTGTTTGGGTACACAGCACTACACCTAGAGTCTCCCTTTAGATGCGGTGTAATGCTATGGAGATGACAAAAGCATTCACTGTGTTTCCTCCATGACGCACTGGAGAGAATGCTGTACCCAGTATGGGAATGCTTTATACTGAGAGACACAAGGATGTTATACCTGAAGAGGCACTCAAACACTCTCCTGAGATCTAGATTGTTTCTGGTGATTTTCaagagaacattaaaaaaatgatgagACCCCTTTTAGTCTCATCAGCACCCCtttcttataattataatatcagTATATTAACAATAGATTAATAGTCACTGAACTCCTAAGCCTAGTCAAACGACCCAAATACCTGTCTGTTACACTCACCTAAATTAAACCAAGATGTTTCCGTAAagggtgagaaaaaaaaaagtttgcatatTTGCATAAAAGACAATTCAGCAAAGGGACTATAAAATGCGTAATCAttcatttcagttcaatttCAGTCATAATTCACTAAAGAAAGGGAACTTTAGCATCTACTGTAACTGAGAATATAGCACTGAAATGTTCTTATAAAAAGATAATTGGAGACCTAGACGATAAATGTGCCTTAACAATGTTAATGACACTGTGGACCACCTAACGAGATATTCAAAGGACAAATACGACAATGTCAAGGTGCAACATGATGTGATGTGCTTATTTCTGATGCAATGTGTGTGATTGACACTGGGACAGAAATAGTTCAATTTAACTTTGATAGCACTATCATAACTCACTCATGATGTGCCAAGTGTTCAGAATATGGCTGATGGTCCTGCACTGCACTATTCCTGTGTAAAGTGAGGATATATGTGTCAGACTAAAATCATGCCCATTCCCTACTCAAAACAGAACCAAATCACctcaatttgacattttaatctttataGAGCTTTTCACATTTACTCTACTCCAAAATGAGAGGGCTCTTTTTTCTGTGTCTTCCGAGAGTAATCAATACAAGATTTAATGGTCACAGGTGTCAGTCAGCCAActgttactttttaattgtttatttttagcaacCGTGTCAGCAATGAACACACTACATCATAGCTATGTGCTTcctgctgtattgttttgttggcCAAACATGTTGTTTCGAAATGACCGAGTGTGTGGCTTGATGTTCTGTAactatttcaatacaaataatgttttgatCACACACTGTGTTGTGTCAAAGATCATGTGCAACTAAGGTTCCCACAACACAATATTGTCACACTCACAGTGAAAATCACACCACAGAAACTAAGAACAATTCAGACAAAAACTGTTAAACAttggaaatcaaatcaaatacatcATAAACACTTGTCAGATGGATGAGAATCCACAAACAGCATCACATTTGAgttccattttaaaaagtgaagcCATACAATTTGTTCTCAGTTTAGTATAGGttattgagaaaaaataaattagataagGATGTTAATTTTGCACTCTTAAAAAGCTTAGAGAAAAAGTTGGTGATTATTTGGAACAGAACAAATTTTGCAATTGAGAAAAAAAGAGCCAGGTCTAGATTTATTAAACCCAAACAAATCTCGAACACCCATTATGAAGTAAATTATTTAGTTATCCTTCATTCcgttaaatgaaaaaataggaACATATGACAGACACACCTTGATTTACTGAGGTATGACCAAACTATGTTTAAAGTGGTCTAGATCAATAGTAGAACAATAAATATgcaactttaaatatattaacaataagCACATAATTAGTCTGTCTGGGAAAGCATGGACTGTATTAATATGATAAACATGGCTTGTGTGAAAGTGTGGACCTTGTTGGGGCCACATATTGTGTGAAGCCTCATGAAAGATAAAGCaaaagtgtgtttttcaaatagAAAATCAAACCCTGGACCTTCAAAGCACAGGGCTTTATAATATAGAACAAAAGAAAGCACAGAGGCctaaaacagacagacacactacTTACACAAAGGCAaagtaataacaatacaaataaaccatcCCATAACACCACACGAAGCAAGAACTTCACTAACCTCACTCAAAACCAACATGAAGAGGCAGTCCTAAACTGTCCTAAGGCAGCCTTTAGTACAGCAGAAGGCATCTCCCAGGGTGTCAGACGGGTTGTGTAGTGAAAACTGAATACAATGTTAACCCGTTCTGAAGAATGGACCACTCTCATTGTCATAACTTACGCTACGGAGAGTGGGAACTagtttaaagacaaaaaaggaGACTGCATTCAACTTCAGGATTAAGAGAGCTAGTTTTGCTAACATTGTTGAGGTATGTAAAATAGAGACAATAATTTATCATACAGTCCAAGTGAAGACACGCAGGTGTGAAAGTTTTATTTCCCACCAgtgcaaaacaatttaaactcAGCATGTTTTCAGACATGATCGCCCGTTTCGGTAATcgattttaacacatttaaacccATGTGattacaagaaacaaaacccaTAAACAGTGTATGTGTTTCTCAACAGTAGTCTGGTTCTAGCTGACCTTGTTAGGTAGCTGTTAAGCAAACTATTAGAAATGAAtaaaggatacattttaaagaataaataacgAGCGTCTTTCAAAGGTGTAAatacagagggtgtcaattcaTTGGCCAAAGGTGTTTGCCATCTTTTTGCTGTTTTCCTTTACTTACAAAATGCCTGTATTTCCCCCATTGGAATCATATCCCTCAATGGATTGTGACGATGTATTTTCTATCAAGTGTTTATATTTATGCCttattgttttatgtctttCCCTTTTTAATATGTCATTAAAGACCTTTTAAACAAA

Function

symbol description
cldn19 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in renal hypomagnesemia 5 with ocular involvement. Orthologous to human CLDN19 (claudin 19).

NR:

description
PREDICTED: claudin-19 isoform X2

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002035 True 5837 mRNA 0.40 5 1329547 1350758

Neighbor

gene id symbol gene type direction distance location
AMCG00002036 NA coding downstream 3698 1319995 ~ 1325849 (-)
AMCG00002031 NA coding downstream 327961 991964 ~ 1001586 (-)
AMCG00002026 NA coding downstream 410843 910934 ~ 918704 (-)
AMCG00002020 NA coding downstream 599675 717131 ~ 729872 (-)
AMCG00002021 NA coding downstream 666095 655746 ~ 663452 (-)
AMCG00002037 NA coding upstream 22985 1373743 ~ 1377930 (-)
AMCG00002043 NA coding upstream 69309 1420067 ~ 1430684 (-)
AMCG00002042 NA coding upstream 90421 1441179 ~ 1447756 (-)
AMCG00002049 NA coding upstream 467982 1818740 ~ 1821514 (-)
AMCG00002055 NA coding upstream 659715 2010473 ~ 2012433 (-)
G120431 NA non-coding downstream 101388 1225719 ~ 1228159 (-)
G120399 NA non-coding downstream 342323 985403 ~ 987224 (-)
G120334 NA non-coding downstream 639589 686944 ~ 689958 (-)
G120320 NA non-coding downstream 908622 420588 ~ 420925 (-)
G120477 NA non-coding upstream 117181 1467939 ~ 1528085 (-)
G120513 NA non-coding upstream 523455 1874213 ~ 1876061 (-)
G120527 NA non-coding upstream 581495 1932253 ~ 1975025 (-)
G120533 NA non-coding upstream 637611 1988369 ~ 1988627 (-)
G120571 NA non-coding upstream 641849 1992607 ~ 1992897 (-)
AMCG00002044 NA other upstream 135793 1486551 ~ 1490567 (-)
AMCG00002078 NA other upstream 1494624 2845382 ~ 2847937 (-)
AMCG00002085 NA other upstream 1570494 2921252 ~ 2931018 (-)
G120748 NA other upstream 1644750 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 1762684 3113442 ~ 3128440 (-)

Expression


Co-expression Network