AMCG00002040


Basic Information

Item Value
gene id AMCG00002040
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1386668 ~ 1388576 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002040
CTGAAACCTGCTGggtaggggctctccaggaccagagctggaCACCCCCAGATGTAGAAACCGCtaattgacattttaacaatatGGCATTGGGTACTTCAACAGAGAAGCGTTAACTGATGGAATACAGAAATTGTACAGCGCCCTGAAACGCTTCCACATATATCAGCAGAAGCAGGACAGAAGCTGTCATCCTTGGCAACAATCCTTTTAAAATCTGGTCAACCAATAAGGATCACTTTGAATCTATCCATTGTTTAGAGCTTCAAGATCTGGAGATATGATGAAGCACAATGGATACGCCCAGTTGGGTCCTCCCCCAGCTGATGACCGTGACAAGTTTGAAGCTCGAGCCAAGCACGTCGGGTATCTGAAAGGCTTCTCTCATATCCTGTTCAGTCCAGATGGGACTATGTTTGCAGTCCGTGGGGCAGATATCTATTGTGGGCCTCCCCCGTCTGATCCAAAAGAAGACTGGCTAGAAGTGAAAGCGAAGTGTGTTGGAAAAGCTGATTGGAATCAATTTCGATTGCTCTTCTTCCATCCTGACGGCATGCTCTATGCTATTACAAAGGAGGAGAAACTGTTCAAAGGTCCTCCTCCTGATGACATACATGTGTCCTGGCTCAGTAGTGTGGCAACAAAACTAGGAAATGATTATGGGGGCGAGATCTACTGCGCACCCCCACCgaaaaatgtcaatgtcaattgGATTGGTGAAGCACAGGGTTGTGGCCGTGCCTATCAGCAGTACGAGATCCTCGCATTCACAGAAGATAAATCCACCAGCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002040 True 793 mRNA 0.47 4 1386668 1388576

Neighbor

gene id symbol gene type direction distance location
AMCG00002034 NA coding upstream 69617 1311197 ~ 1317051 (+)
AMCG00002033 epha8,LOC107582396,LOC107654448,LOC107756634 coding upstream 158590 1202250 ~ 1228078 (+)
AMCG00002032 epha8,LOC107565732,LOC107654383,LOC107582396 coding upstream 207373 1164861 ~ 1179295 (+)
AMCG00002027 NA coding upstream 358103 1009222 ~ 1028565 (+)
AMCG00002030 LOC108441403 coding upstream 400285 967777 ~ 986383 (+)
AMCG00002041 NA coding downstream 3684 1392260 ~ 1410838 (+)
AMCG00002038 cunh1orf50,LOC107654415,LOC107582467,LOC107756638,LOC107751182,LOC105895900 coding downstream 44532 1433108 ~ 1438698 (+)
AMCG00002039 cdc42,LOC101067723 coding downstream 75668 1464244 ~ 1472376 (+)
AMCG00002045 wnt4,wnt4a,LOC107654388,LOC107565731 coding downstream 314654 1703230 ~ 1709587 (+)
AMCG00002046 trim62,LOC102789653 coding downstream 361639 1750215 ~ 1750664 (+)
G120254 NA non-coding upstream 718611 667739 ~ 668057 (+)
G120201 NA non-coding upstream 1263500 122542 ~ 123168 (+)
G120193 ube2j2,LOC107599097 non-coding upstream 1283395 100119 ~ 103273 (+)
G120494 NA non-coding downstream 485636 1874212 ~ 1876528 (+)
G120516 NA non-coding downstream 509358 1897934 ~ 1955361 (+)
G120536 NA non-coding downstream 607851 1996427 ~ 2005914 (+)
G120563 NA non-coding downstream 784894 2173470 ~ 2174499 (+)
G120564 NA non-coding downstream 786011 2174587 ~ 2176442 (+)
AMCG00002019 NA other upstream 393904 682670 ~ 992764 (+)
G120518 NA other downstream 535446 1924022 ~ 1940816 (+)
AMCG00002076 NA other downstream 1463578 2852154 ~ 2854127 (+)
G120742 NA other downstream 1568332 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 2145238 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 3830254 5218830 ~ 5226656 (+)

Expression


Co-expression Network