AMCG00002042


Basic Information

Item Value
gene id AMCG00002042
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1441179 ~ 1447756 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002042
ATGACCGGCTCTCTGACACCGCGCATcgcttcctccctccctccctccatcgcTCGCCCTGCCCGGCTGCTGTCTCTCCGATCGCCATTCCTCGCTGCCCGGTCTGATCCGCACAAACAGCGCCTCTCTGACACCGACGCCTGGGCTCCGCTGGGCCCGGTGCCGGGGGGGATGCGGCGGCCGGGTTTGGGCAGCGCCTGCTCGGATGCCTCTTCGCGCTCGGGGTTCCCCAGTCTCAACTGCAGGGGCACGTCGTACGTAGCGTCTCATATCCGCTCCCGGGGGCGGGCCGACGTGACCCACAGCGAGGCTGGCCGGCGTGATGACGCAGGGATGAGCGGAGCCGTGCAGACATGCACGCAGTGTTGCCCGGGCTGTGTGGCGCTCTGTGACGGAGAGTCGGtgccccccggccccccggccccccggccccccggcccccccATGGCGGCCCCCCCGAGCCCCTGGCTCCAGCGCGTGGCCTCCTTCTCGCGCAGCCCGAGCCGCTTCCTGAGCCGCGCGAGCGCCGACGTCTTCCTCGCGGAGCTGCTGCGGGGCCTGCGGGACGAGCGCGCGGCGGAGAGCACCCAGGTGCTCTTGCTGTCCCTCCTGCAGGAGTACCCTACTCTCCTGTGTCCATTCAGCTCAGCAGGAGAGGAGACCTGCACCGCACTGATGGCCATTTATGCACAAGTTCCACACAAGGCAGTGAACTTCAAGTGTCATCTGATGTTGGCCATCACCAACGTGTTCATATGCACGTCCTCTGCGACGGGGGAGGGGGAAGTGAAGGTGGCGGAGCGCGTTCTGGACCTCCTGATCCAGACTGTCCAGGACACCAACGATCATAAGGACAGCATCACCTGTCGGCCCCTCCGAGCCCTGGCCTGTGACTGCCTGCGGGAGATGGAAGCCTGCTATCCTGGACTGCTTTCCCAGAAGCTGGAAGCCCTTTATTTCCTGAAGCAGCAGGAGACGAGCACTTTGCACCAAGCGTACGCCCTCTTGTACACGGTGGCGCTGAAGAACGCCGTGCACCTCCTGTCCCGGCAGAAGGCCATCGCGGAGGGCGATTTAAAGAACCTCTTGTCTGGGAACGAAGGCTTTGTCTGGAAGGTAATGGAGAAGCCCTTGCCTCCTTTCCCACtgagcagcacagagcagaTCCCAGTGCTTCAGACCAGCGCGGAGACCAGAGAGCTGAAGTCGGTCGTCTCCTTGCTGCTGGAGGAGTCGTACCTCCTCACCGCCGTCTCCCAGTCCGCCCTGCTGCGGGAGTTGATCCAAGTGGTGGTCATGGTCCAGGCCCTGTCCCCGGCCCTCTTCAAGTCTCAGCTGCTGCGTCTCTTCGGCACGATGGAGATATCCCTGCTGCACTCCACGCTGCTCATGAAAGGCACCTTCACCGATAGCCTCTTCACCACCGAAGACGAGAATTTCCTCCTCAAGCGCCTGGTGGGGATGGCCCAGCACCCCCTGCTGAGCTCCGCCCACAAGCTGTTCTGCATGGACTGCATCCTCCACTTCCCAGAGAACCGGCCCATCTCCTGCAACGGGGAGGAGAGCCTGCCTGTGCTGGTCACGCCACGCTTGGCTGCTTCCCTCCTGCCCACCGTCTTCAATGACAGCGGAACCATGCTCCGCCGACTGCGCCTCCTCAGCCTGGTCTACCTGGAAGCCGACGAAGACGAGGTGGAGAAAGGAGTGGGCTACCTGTTTGATCACCTGATGGCCCTCTGGAAGATTGTAGACAACTACGGCACCCGAGAGGTGACAGCAACTTTCTTCAGAGCCGCCTACACCTTCCTTTATTATTTCTATCCCAATGAGAAATTCACCAGTGACTTGACGAAGAGCCTCTGCGAACTCTATTCCAGGCAGAGCCAGCTGGCACCCAACATGATCAACCTGATTGACCGCACCCAGGAGAATTTGCCGGAATCTGGGTGGCCAATCAGACTGCTGCAAGCCTTGCAGACCCAGATTGTGGAGCTGCCTCTGTCCCAGATGACGACCCAAAGCCTCTGCTGGCACTTGAAAGTCCTGGGAAGGGTAGCGAAGGAGAGCCAGGTTTCTCAGAAGACCACCGTGCGCTTCCTCCTCAATCTCCTCGCCAGCTCGGGCCTGTGTGGATCGGGAGACTGGCGAATGGGCAACGCTGTTCTCGCGGTCTGCCGCCATCTCCTGCGGCATCCCGGGCTGGACCAGGTGTTCATCGAGCTGTCCGATCTCCTGCAGTTCACTATGCACCATTACGAGGACATGGACATCCAGGACCACGCGCGATTCTACTACACGCTGCTGACGAACCTGTCGAGAGAAAAGCTCTCCGGAGTCTTGGATAAGGGGCCAGAAGGAGGACAGGCCAAGGTCAGGTCTCTCTCGTCCCTCATGGCTGAGAGTGAGGAGCTCTCCAGCTGCTTGACCATCCATCCCACCAGGGGCCCAGTGCTGCACCTTCTTAAGCACCAACTGAACGGAGTGGCCAGCGAACTTCAGAACAGCAGATCTGAGCACAGCGGGGTTGAAGACTACTTGAAAACCTATCGAGACCAGTTCCTCAGCCCTGGCTTTTCCTCCGACATCGTCCTGAAATTCCACCTGACCTTTGCCGGGGAAGTGGAAGCTCTGTACCACAAGCTGTTCTGTATCTGCCTGCATTTCGAGCTGACCGACTCCAACTACGAGGAAGTGACGGACATCGACGTGCCCTGCCTGCTCAAGGACAGGAAGCCCCCCGTGGtctctctcacactgacacCTCGGCAGCCGTACCCCATGGTGCTTCGAGCCAGCGCCATATTCTCCACAGAGGACGGGTTGTCCTGGCGCACCCAGCTGGCCGATGTTCCCGTGGCGTTCCCGGACGTGTTCCTCCCGTTGCCTGTGCCCGTCAGCTGGTCTTTGGAAGCGAGGGGCCGGCTCTTCGATCAGCTTTGGAGAGCCATGTCCTCCAGGGAATCTAGCCAATCTGCCATCAGCCTGTTCTGTTTTCAAGTTGGGGAAAAGCCTCTAAGCGATATAGTTCAGTCCCACTTCCATCGCTACCTGGTCTCGGCACAGTCCAGTCAAGAGCACTATAAAGTCTTGCTGTTCCTGCCCCCCAAGTTTCATATATTGTTTGACATCAAGAACGCAGAGGATGCGGCTCGAGTGAACATTGCCACCGACAGCTGGAACCTTTTGCCTTACATCAACTCGTACCTTAAAAGCATTACGGACCTGGACAGTGTTACAGTGCCAAGTCCGGAGGCCTGACTCTGCAGGGCACTTTTGTCATTGTTAGGTCATTGTTTCACATCACATCTGCACTGAGCTACATTTATGCAACTTCATCTCACCTCTGACACCTGAAAGATGTAAAAGCTGAACTATTCTTGAATAAAACTGCCTTcaaatat

Function

GO: NA

KEGG:

id description
K19022 AP5B1; AP-5 complex subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002042 True 3401 mRNA 0.59 4 1441179 1447756

Neighbor

gene id symbol gene type direction distance location
AMCG00002043 NA coding downstream 10495 1420067 ~ 1430684 (-)
AMCG00002037 NA coding downstream 63249 1373743 ~ 1377930 (-)
AMCG00002035 cldn19,LOC106583106 coding downstream 90421 1329547 ~ 1350758 (-)
AMCG00002036 NA coding downstream 115330 1319995 ~ 1325849 (-)
AMCG00002031 NA coding downstream 439593 991964 ~ 1001586 (-)
AMCG00002049 NA coding upstream 370984 1818740 ~ 1821514 (-)
AMCG00002055 NA coding upstream 562717 2010473 ~ 2012433 (-)
AMCG00002057 NA coding upstream 637673 2085429 ~ 2119334 (-)
AMCG00002056 efhd2,LOC107683000,LOC107707677,LOC107591793,LOC107550510 coding upstream 673585 2121341 ~ 2127768 (-)
AMCG00002058 NA coding upstream 713788 2161544 ~ 2161834 (-)
G120431 NA non-coding downstream 213020 1225719 ~ 1228159 (-)
G120399 NA non-coding downstream 453955 985403 ~ 987224 (-)
G120334 NA non-coding downstream 751221 686944 ~ 689958 (-)
G120320 NA non-coding downstream 1020254 420588 ~ 420925 (-)
G120477 NA non-coding upstream 20183 1467939 ~ 1528085 (-)
G120513 NA non-coding upstream 426457 1874213 ~ 1876061 (-)
G120527 NA non-coding upstream 484497 1932253 ~ 1975025 (-)
G120533 NA non-coding upstream 540613 1988369 ~ 1988627 (-)
G120571 NA non-coding upstream 544851 1992607 ~ 1992897 (-)
AMCG00002044 NA other upstream 38795 1486551 ~ 1490567 (-)
AMCG00002078 NA other upstream 1397626 2845382 ~ 2847937 (-)
AMCG00002085 NA other upstream 1473496 2921252 ~ 2931018 (-)
G120748 NA other upstream 1547752 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 1665686 3113442 ~ 3128440 (-)

Expression


Co-expression Network