AMCG00002043


Basic Information

Item Value
gene id AMCG00002043
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1420067 ~ 1430684 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002043
CGGCAGCCCCTCACGCCCCGGGCTGTGGACTGAGATTGGGGAGGGCTCCGCTGACTCCACCCTCCCAGACGTGCGCCTCTGCCCGGCCGGGAGCGCAGGATCCTTCCACGGCGGGACGCATCGCAGCTGCTCGCTCGACACCGGCGAGGCCCCACCATGTCCCGGCTCTTCGGCCCCGTCCTGCTCGCCCTCTCGCTGCTGCCCGCGTCGCTCATGGACGGGCAGCTGAACACCCGGGCCCCGCTGGAGCCCTACGACCTGCTCTTCGACGGCGCGGTGGAGGCGTATTACAAGGGGGACTGGAAGTCGGTCATCCTGAACATGGAGCGGGCGCTGAGGAACAAGGGCTTCATCCGGCGGGCCAAGGCGCAGTGCCGCCTCCAGTGCGCCAACCGCACCGCCTTTGGGGAGCCCATCCCCGGCCTGGGGATCCCCCTGCCAGGCGCCGGCTCCGTGGAGGACCTGGGCTTCTTCCAGAAAGTGCTGCAGCGGGCCGACTGCATAAAGACGTGCGAGCTGGAGAAGCTGGGACCCCCGTCTCTGCACAAGATCAGCGAGGAGGTCGAGCTGGAGTTTCAGAAGAGGAGCCCTTACAATTACCTGCAGGTCGCATACTTCAAGaTCAACAGGCTGGACAAGGCAGTGGCGGCCGCACACACCTTCTACCAGGCCAACCCTGACCACCTGGAGATGAGGCAGAACCTGGAGTACTACAAGATGATGGCTGGAGTTCAGGACACCGACTTCAAAGACCTGGAGACACGGACCCACATGGAGGAGTATGTGAAGGGCGTGAGGTTCTACACGAACGACAAGTTCCTTCCCGCCATCGATCACTTTGAGGCGGCGGTGGAGGAATATTTCACGGCGGATCAGGAGTGCCGCGCGCTGTGCGAGGGAACGCTGAACTGCAAGCAAAACTGCGCTGTGGAGCTGGCGACGAAATCTGGCAAGAACAAGCCTGTGGAGGACTTCTTACCGGCCCACTTCAACCACCTCCAGTTCTCGTACTACAACAGTGAAAACTACGAGAAGGCCATCGAGTGTGCCAAAACATACCTCCTTTTCTACCCCAATGAAGAAGTGATGAATCAGAACCTGGCTTATTACTCCGCGGtgctgggagaggagagggcCGTGCTGATATCTGCCAGGGAGAGTGTCCGGCGGCACATTCAGCAGTCTCTGCTGGAGAAGGAGCTGCTGTATTTTGGTTACGAAATCTTTGGAATCACTTTTGTGGATCCGGACGCTTGGACTCCTATTGATATAATGCCTCCGAAgctgagagagaaacagaaggctgagagagagacggcGGCCAGGATCACAGAGGAGATCGGCAATCTGATGAAGGAGATAGAGACTCTGGTGGAGGAGAAGACCAAGGAGTCCACGGATATCGCCAAGTTGGTGAGAGAAGgtggAAACGTGCTGTACGACAACATCAAGGTGACCATGGCTTCCAAAAGCCTCAACGGCTCCCAGCGAGTGGTCTTGGATGACGTGATCACAGACGACGAGTGCAGGGAGCTCCACCGCCTCTCCAATGCTGCTGCCCTCAAAGGTGATGGCTACAGGGGCAGGCCTTCCCCTCACACCCCCAGCGAGATGTTCCAGGGAGTAACGGTCCACAAGGCTCTGAAGCTGGGACAAGAGGGCAAGGTGTCCCTGAAGAGCGCCCGCCTGTATTTTGACGTGAGCGAGAAGGTGCGCACAGTCCTGGAGTCCTACTTCCGCCTGGAGACCCCGCTCTACTTCTCCTACACCCACCTGGTGTGCCGCTCCGCCATCGACGAGAAACAGGAGGGCCGGGAAGACCTGAGCCACCCTGTCCATGTGGACAACTGCCAGCTGGCGGAGGTCAGACCCACATGCGGGCGAGTCGTGGGCTTCGGGGCCGGGAAGGAGAACCCCCACGGGGTGAGAGCGGTCACCAGGGGGCAGCGCTGTGCAGTGGCCCTCTGGTTCACACTGGACCCCCGACACAAGGAGAAGGAGCGGATCCAAGCAGAAGATCTCTTGAAGATGCTCATCAGTCCCATTGATGCGGAGTTCCAGGGATCGGCTAAAGAAAGCGCCCCAGAAAAGCCCCCAGTGGAGCAACCAGAGCCGACAGAGCAGCCCCCAGCAGAGCAGCCCCTAGCGGAGCAGCCCCCAGCGGAGCAGCCCCCAGCGGAGCAACCAGATCCGACGGAGCAGCCCCCAGCGGAGCAGCCCCCAGCGGAGCAGCCAGATCCGACAGAGCAGCCCCCAGCGGAGCAGCCGGAGCAACAGatcagcacagagcagagcaaaATGGACTCGGCGACGGGGTCTGAAGCAGCAGAGACGGCGTCCGTCTCCGACCCGTCCACCATCAACAGCTCGGACTCTTCAGAGCCGCAGACGGCAGATTTAGGAGCCCAGGACAACAAAGCTGCCATCAGTGCAGCAGTGGACTCTCACAATGGAAAAGAGGAGTTATGATCTCTCAACTGAATGGTCATTTTCTatcatgttgttattttttttatatatatgtgcatttcGACACAAGTTCAATAAAATGGTGTGAGGTTGTTGTTTAATA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
K08134 P3H1; procollagen-proline 3-dioxygenase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002043 True 2572 mRNA 0.59 14 1420067 1430684

Neighbor

gene id symbol gene type direction distance location
AMCG00002037 NA coding downstream 42137 1373743 ~ 1377930 (-)
AMCG00002035 cldn19,LOC106583106 coding downstream 69309 1329547 ~ 1350758 (-)
AMCG00002036 NA coding downstream 94218 1319995 ~ 1325849 (-)
AMCG00002031 NA coding downstream 418481 991964 ~ 1001586 (-)
AMCG00002026 NA coding downstream 501363 910934 ~ 918704 (-)
AMCG00002042 NA coding upstream 10495 1441179 ~ 1447756 (-)
AMCG00002049 NA coding upstream 388056 1818740 ~ 1821514 (-)
AMCG00002055 NA coding upstream 579789 2010473 ~ 2012433 (-)
AMCG00002057 NA coding upstream 654745 2085429 ~ 2119334 (-)
AMCG00002056 efhd2,LOC107683000,LOC107707677,LOC107591793,LOC107550510 coding upstream 690657 2121341 ~ 2127768 (-)
G120431 NA non-coding downstream 191908 1225719 ~ 1228159 (-)
G120399 NA non-coding downstream 432843 985403 ~ 987224 (-)
G120334 NA non-coding downstream 730109 686944 ~ 689958 (-)
G120320 NA non-coding downstream 999142 420588 ~ 420925 (-)
G120477 NA non-coding upstream 37255 1467939 ~ 1528085 (-)
G120513 NA non-coding upstream 443529 1874213 ~ 1876061 (-)
G120527 NA non-coding upstream 501569 1932253 ~ 1975025 (-)
G120533 NA non-coding upstream 557685 1988369 ~ 1988627 (-)
G120571 NA non-coding upstream 561923 1992607 ~ 1992897 (-)
AMCG00002044 NA other upstream 55867 1486551 ~ 1490567 (-)
AMCG00002078 NA other upstream 1414698 2845382 ~ 2847937 (-)
AMCG00002085 NA other upstream 1490568 2921252 ~ 2931018 (-)
G120748 NA other upstream 1564824 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 1682758 3113442 ~ 3128440 (-)

Expression


Co-expression Network