AMCG00002045 (wnt4,wnt4a,LOC107654388,LOC107565731)


Basic Information

Item Value
gene id AMCG00002045
gene name wnt4,wnt4a,LOC107654388,LOC107565731
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1703230 ~ 1709587 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002045
ATGGGGACTGTGACAGACCGGGATGAAAGGTACCTGGCCAAGCTGTCGTCGGTGGGCAGCATCTCGGAGGAAGAGACGTGCGAGAAGCTGAAGGGCCTGATTCAGCGCCAGGTGCAGATCTGCAAGCGCAATGTGGAGGTGATGGACTCGGTGCGTCGGGGCGCCCAGCTGGCCATCGACGAGTGCCAGCACCAGTTCAGGAACCGGCGGTGGAACTGTTCCACCCTGGAGACGCTGCCCGTCTTCGGAAAGGTGGTCACCCAAGGCACTCGGGAGGCCGCCTTCGTATACGCCATCTCCTCGGCCGGTGTGGCGTTCGCAGTAACCCGGGCCTGCAGCAGCGGAGAGCTGGAGAAGTGCGGCTGTGACCGCACCGTGCACGGGGTCAGCCCAGAGGGGTTCCAGTGGTCGGGCTGCTCAGACAACATCGCTTACGGGGTGGCGTTCTCGCAGTCCTTCGTCGACGTGAGGGAGAGGAGTAAAGGGTCGTCTTCCAGTCGAGCGCTAATGAACCTCCACAATAACGAAGCCGGGAGGAAGgCCATCCTGAGCAACATGCGTGTGGAGTGCAAGTGCCACGGCGTGTCGGGCTCCTGTGAGGTACGGACCTGCTGGAAGGCCATGCCCACCTTCCGCAGGGTGGGCGGGGTGCTGAAGGAGAAGTTCGACGGGGCCACGGAGGTGGAGCAGCGCAAGATCGGCACAACCAAAGTGCTGGTGCCCAAGAACTCGCAGTTCAAGCCCCACACGGACGAGGATCTGGTCTACTTGGACTCCAGCCCGGACTTCTGCGACCACGACCTGAAGAACGGGGTGCTGGGCACGGCTGGGCGCCACTGCAACAAGACCTCCAAGGCCATCGACGGCTGCGAGCTCATGTGCTGCGGCCGGGGCTTCCACACCGaggaggtggaggtggtggACAGGTGCAGCTGCAAGTTCCACTGGTGCTGCTACGTCAAGTGCAAACAGTGCCGGAAACTGGTGGAGATGCACACCTGCCGGTGA

Function

symbol description
wnt4 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within several processes, including animal organ development; regulation of axon extension involved in axon guidance; and sensory epithelium regeneration. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including central nervous system; head; neural rod; neural tube; and reproductive system. Human ortholog(s) of this gene implicated in Mullerian aplasia and hyperandrogenism. Orthologous to human WNT4 (Wnt family member 4).

NR:

description
PREDICTED: protein Wnt-4

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007507 heart development biological_process
GO:0045165 cell fate commitment biological_process
GO:0048841 regulation of axon extension involved in axon guidance biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0021986 habenula development biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K00408 WNT4; wingless-type MMTV integration site family, member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002045 True 1008 mRNA 0.63 5 1703230 1709587

Neighbor

gene id symbol gene type direction distance location
AMCG00002039 cdc42,LOC101067723 coding upstream 230854 1464244 ~ 1472376 (+)
AMCG00002038 cunh1orf50,LOC107654415,LOC107582467,LOC107756638,LOC107751182,LOC105895900 coding upstream 264532 1433108 ~ 1438698 (+)
AMCG00002041 NA coding upstream 292392 1392260 ~ 1410838 (+)
AMCG00002040 NA coding upstream 314654 1386668 ~ 1388576 (+)
AMCG00002034 NA coding upstream 386179 1311197 ~ 1317051 (+)
AMCG00002046 trim62,LOC102789653 coding downstream 40628 1750215 ~ 1750664 (+)
AMCG00002047 trim62,LOC107756651 coding downstream 93199 1802786 ~ 1809281 (+)
AMCG00002048 znf362,LOC105894282,LOC106582819 coding downstream 142408 1851995 ~ 1873164 (+)
AMCG00002050 NA coding downstream 177642 1887229 ~ 1904008 (+)
AMCG00002053 NA coding downstream 276173 1985760 ~ 1986389 (+)
G120254 NA non-coding upstream 1035173 667739 ~ 668057 (+)
G120201 NA non-coding upstream 1580062 122542 ~ 123168 (+)
G120193 ube2j2,LOC107599097 non-coding upstream 1599957 100119 ~ 103273 (+)
G120494 NA non-coding downstream 164625 1874212 ~ 1876528 (+)
G120516 NA non-coding downstream 188347 1897934 ~ 1955361 (+)
G120536 NA non-coding downstream 286840 1996427 ~ 2005914 (+)
G120563 NA non-coding downstream 463883 2173470 ~ 2174499 (+)
G120564 NA non-coding downstream 465000 2174587 ~ 2176442 (+)
AMCG00002019 NA other upstream 710466 682670 ~ 992764 (+)
G120518 NA other downstream 214435 1924022 ~ 1940816 (+)
AMCG00002076 NA other downstream 1142567 2852154 ~ 2854127 (+)
G120742 NA other downstream 1247321 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 1824227 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 3509243 5218830 ~ 5226656 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004310 wnt4 coding NC_007122.7 CM002895.2 39167846 ~ 39202915 (-)
grasscarp (Ctenopharyngodon idella) CI01000306_10589795_10591581 WNT4.S, WNT4, WNT4A2, WNT4A, WNT4A1 coding CI01000306 null 10589670 ~ 10591581 (-)