AMCG00002050


Basic Information

Item Value
gene id AMCG00002050
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1887229 ~ 1904008 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002050
CTGGCTGGGACGGGTTAGGGATGCCTGTGGCCTGTCAGTGTGGTGGCTGTCTGTTCTGGAGCTGGGGCTTCGTGTGCAGCCGGTGCCGGTGACGGGAATTTTTCCTCTATCTTCGCGTTGCTTTCTTTGTATCAGTTGATAATGGAGAGGAGGGTGTGTTCTTTTTGTACATTGTTAATTATGTATTCAGCGGTATTATTGAGTGTTAAATGAATTAACCATTCTGAAAATAGCAATAGGGTTTTCTCCCACCTCCACAAACTAAAAGCTGGTATAGTATTTCTGAAAGAGACCCATTTGTGAAGCTTTCATCACTCCAGGCCCAAAAGTCAAAGACCTTCTGATTCCAACAGCCGTTGCATTATTACATTATGAGCTTACCTGGCTGATTTGCGCAACTGAGGTCTGTTCGTGGGCGGTGAATTCAGGTGCATCAGTGACTCTGTGGATGTATTAGATGCAGACAAAGGGAACCAGTGACGCGCTGCGTGGAGATCAAGGGTTCAGCCACGGTTTGGTGCCAATAGAAATACAAGGGCTGTGAGTTCCTGAGTGGGTGACCCACTACCCAGTGGGTGTACCTGGGTGGTGATTGCTAACCGTAATGAATGCATGATTGATCTAAAATGTGAGAAACATGCTCCGCTTGAAGACCTCCGTATCCTCTCTGACGCTCACGTGTTCTTCCAGTAGATTCAGcttTAAGGAGAGCCACAAGTGGAAGACCTTATGCCTTGTCTGCATGCTCATGCTGTTCTGTTCAGCACTCTTTCCCCACTTGTCCAAAAGCAGCTGCCTCAACCAGCTGGCCTACAGTTTCTTGTTATCACAGCCCAACGGCCCAGTGTCCATTCCTGGAGCAGGTCTTCTGTCCAGCAAGGGTCCTGTCAGGCCAAAGTGGGGCCAGCTGCCGAGCACGGGCCCCAAGATGTGCCACAGGTACCTGGATGCCTACCTCAAGGATTTCCTCACCTCTGCAGAGAGCCACTTCATGCCAGGCTTGCGAGTGGTCTACTACATCTTCACTGACAGCCCTGAGAGGGTCCCCGAGATCCAGCTGGGGCCACAACGGAGTATCGTTATCATGAAGGTGGAGAAGCACAAACGCTGGCAAGACATCTCCATGATGAGAATGCTGACCATCACCAATGTCATAGAGTCCCACATCCGTCACCAGGCCCAGTACGTGTTCTGCACAGATGTGGACCAGATCTTCGTGGGCCGATTCGGGTCGGAGGCTCTGGGAGACTCTGTGGCCCAGTTGCATGCTTTCTTCTACAACAGAGAAGCTGATAGTTTCACCTATGACAGGAATCCCAATTCTATGGCCTACATGTATAAGGGTGACCACTACTACCATGCAGCCATCTTTGGTGGCACGTGGGAGAACGTGCAGCGCCTGGCTGAGAGCTGCTACCTGGGCATCATGACGGACAAGCGGAACCAGGTGGAGGCCCTGTGGCACGATGAGAGCCACCTGAACAAGTACTTCTGGATCATGAAGCCAACCAAAGTGCTGTCCCCTGAGTACTGCTGGACAACGGATATCAAGCAACGCAGTGAACTGCATTTTCCTAGACTCCTCTGGGCTGAAAAGCACTACAATGAACTTAGGCAGTAGTTGGGTCATTTGACTGAGCCCATATCCAGAACcagaagcaaatatatattttttctactaaCAAAATGGTTCCAGGAATTTTTAAGTTGCTCTAGAACTTGGTTACCCTAGGTATTTATTGCGAAACAATCTCAAACATTGACACATTTCACTAGAGGAATACGATTCAAACATGGTTTCCCTTAAGTACTGGTCCTTCTAGTCAATAAATAATGTGGTTTGCActaatttcattttatgatttaactgaaatggtttgataaataaaataaaaaacatcctatatttaagtatttatagaTCATTTGTGGAGATCTTTTCTTTATCAAGGCTTTTGCCCAGGGCCAGGGTCAAAGCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002050 True 1981 mRNA 0.48 4 1887229 1904008

Neighbor

gene id symbol gene type direction distance location
AMCG00002048 znf362,LOC105894282,LOC106582819 coding upstream 14065 1851995 ~ 1873164 (+)
AMCG00002047 trim62,LOC107756651 coding upstream 77948 1802786 ~ 1809281 (+)
AMCG00002046 trim62,LOC102789653 coding upstream 136565 1750215 ~ 1750664 (+)
AMCG00002045 wnt4,wnt4a,LOC107654388,LOC107565731 coding upstream 177642 1703230 ~ 1709587 (+)
AMCG00002039 cdc42,LOC101067723 coding upstream 414853 1464244 ~ 1472376 (+)
AMCG00002053 NA coding downstream 81752 1985760 ~ 1986389 (+)
AMCG00002052 NA coding downstream 124605 2028613 ~ 2032618 (+)
AMCG00002051 NA coding downstream 150723 2054731 ~ 2076937 (+)
AMCG00002054 NA coding downstream 177225 2081233 ~ 2082288 (+)
AMCG00002059 NA coding downstream 312543 2216551 ~ 2220784 (+)
G120494 NA non-coding upstream 10701 1874212 ~ 1876528 (+)
G120254 NA non-coding upstream 1219172 667739 ~ 668057 (+)
G120201 NA non-coding upstream 1764061 122542 ~ 123168 (+)
G120193 ube2j2,LOC107599097 non-coding upstream 1783956 100119 ~ 103273 (+)
G120536 NA non-coding downstream 92419 1996427 ~ 2005914 (+)
G120563 NA non-coding downstream 269462 2173470 ~ 2174499 (+)
G120564 NA non-coding downstream 270579 2174587 ~ 2176442 (+)
G120565 NA non-coding downstream 280772 2184780 ~ 2184980 (+)
G120566 NA non-coding downstream 298609 2202617 ~ 2203371 (+)
AMCG00002019 NA other upstream 894465 682670 ~ 992764 (+)
G120518 NA other downstream 20014 1924022 ~ 1940816 (+)
AMCG00002076 NA other downstream 948146 2852154 ~ 2854127 (+)
G120742 NA other downstream 1052900 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 1629806 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 3314822 5218830 ~ 5226656 (+)

Expression


Co-expression Network