AMCG00002051


Basic Information

Item Value
gene id AMCG00002051
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2054731 ~ 2076937 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002051
CGCAGCCCCGCAGCCCCGCACACACGCCGAGGACACCTGCGGAGCGCCACGAAGATGAGAAAGTACCTCAAAGGGAAGAGAATATACCTCCTCTGCATCCCCATGGGTTTTTTTCTAGCTCTCTTTGGCCCATTGTCCGTCAGGTATTTTGAAGGACTTATTCCCATGGAAAAGTGCAGGTCCAATTCCTCACAACTAAAGTCTGCAAACCACATGGACAACACTCTGGATCTCTGGTCCAGGGCAGACGTGCAGACCTGCACTTACTGGGGTGCTCCGGTCATCTGGGATGGCATGTTTGATCCTGAACTCTACGATGCGttttacaggaaaacaaatacctCTGTAGCACTGACCGTATTTGCTGTTGGCAAgtaCCTGGATGCCTACCTCAAGGATTTCCTCACCTCTGCAGAGAGCCACTTCATGCCAGGCTTGCGAGTGGTCTACTACGTCTTCACTGACAGCCCTGAGAGGGTCCCCAAGATCCAGCTGGGGCCACAACGGAGCATCGTTATCATGAAGGTGGAGAAGCACAAACGCTGGCAGGACATCTCCATGATGAGAATGAAGACCATCAGCAACATCATAGAGTCCCACATCCGCCACCAGGCTCGGTATGTCTTCTGCATGGATGTGGACCAGATCTTTGTGGGCCGATTCGGGTCGGAGGCTCTGGGCGACTCTGTGGCCCTGATGCACTCCTTTTTCTACCACAGTCCGAAGTTCATGTACACCTATGACAGGAATCCCAATTCAGTGGCTTTCATGGAGAAGGGAGACCTCTACTACCATGCAGCTGTCTTCGGTGGCAAGTGGGAGAACGTGCAGCACCTGGCTGAGAGCTGCTATCTGGGCATCATGACGGACAAGCGGAACCAGGTGGAGGCCCTGTGGCACGACGAGAGCCACCTGAACAAGTACTTCTGGATTCATAAGCCATCCAAAGTGCTGTCCCCCGAGTACTGCTGGGCAACGGAAGTTGGCTACCGTAGGGACTTGCATTTTCCCAGACTTGTGTGGGCTGAAAAGCAGTATGGCATACTGAGGACATAGCTGTGAATTAGAGCTTCAACTTGGCTCCAAGGCCACATGCAAATAAAAGAGCATATCATTCTACTGATTATCGCAAGTGTGTGTATCCCCTCGTCCCCCTAAACTTTtgcctatgtatgtatgtgtatatatatatatgtatatcagtagattaatcgggcacttaaaataagtgtaatggCTAAAtcatagctctcaagttttcaaaatgccaATGTGTGAGATTGGTCACATAAGAAGAAAATCCCAGCCTTATGGCATTGaacattatcctgctgaaagaatCTGTTCGCAGGTGGATACCCTGCTGCCATGAAGGGATGCTCCCGATCGGCAACGATGTTCAGATATCCTGTGGCATTCAGACATTGCTCCACTCGTATCATGTATCCAATGTGTGCCATGAAAACACAGCCCACACCATTGTATTGTTGACACCCGGCAGGACGGAATCAAGGACTCCTGTGGTTTTTGCCATATTCTGGTCCTCCCATCACATGAAACAGCAGGAACCgggattcatcagaccaggcaatgtttttccaatcctccatggtccagtgtttgtgttccttAGCCCATTGCAACCGCAGAGTGGAATTCAGTGAGGTTGTTGGCTGCCATAACCCATCCGTGTCAAGGTACGACAGGTTTATGCATTCTGATATGCCTCTTTCGGCACTCCTGTTGTACTCGGCTGTTATTTGACAGGTTGTGTCAGCTTCCGTCAGCCACTTTCATCAACAAGCTGTTTCCACCATAGGACCGCCATTGGTTGGATGATTTTTGGGTGGTGGAGCATTCTCTATACACCCGTGACACTGTCATGTGTGAGAACCCCATCAGGGTGGCTGTTTCTGACATACTCATACCGGCTAGTGCCAACTACCATGGCCCATTCAAAGTCACTTAAATCTAGGTGCCTTCCTACTACTTAGTGCATGCAAGGACTACCATATCTTAACATCATAACTGCATGAGCAAGTCTTTCCTTCTCACATGGCTGGTTGGGACTCTTGGCTTGACAGTTTGCTGTAGTCAGCTCAGCACTGGTCTGTGGCAGGGTGTACAAATTCTGCTGATGATGCAGCGGTGCATTGTGGGGCATCTGTGCCGATGCTCCACTGATGAGGTTCCCGCTGTGGAGGCCTGGAATTCCAGATCCAGGGCGTCTGAGATCAGAACTGGATAGTTGCTGGATATCCCATGGAAACTGAAAGAATGTCTCGGTCAAgtgaagttttttgtttttgttatttttcctgtttgttccCAAATCCTCTTTTTTACTGTTTACTACTTCAATTCTGTGTACATAGAATGGttagtttttatgtttaatagaATATAGTTTCGAGTATCCTGTTTCTATCCTTTTAGTTAGtagttttagaaaaaataaattattcttatGTGACTTTTAGTatttacactttattattttaaaaatgtgttaaaactaACAGATGACAGGAAAATCCTATATGACAGGGAGTTTTATGACTTTTGCTTGGTCCCTCTCCATTTGTAAACTATACTTTATTGCCTGGTCTTTACAACAGCCAGGTAACAATGCACACATCTGTCATATGGAGGTAGGCTGACAATATTCCCATGAAGTCATTGTTCAGTTGTAAAGATCCCCTGAGGTTAAACACAGTAGAAAGTGTGATCTCAATACAAGGTGAGTTATTACATGTCCGCACCCAAGCAAAAAGAATCAAATAGatctcattttaatataattgtagaGGTTACCAAACCTAAAATGAACATGTTTAGACCAGATGTCCTCAGCGTTTCTCAGCGTGTAAATATGTCTTGAAAACTTACAGTTGCAGGATTGGTATAATTTACTAATAGTACCTTCTGCAGCCTTCCACAGATATTAAAGtttacaagaagaaaaaacaataaaacaaccaaCATATACAGTTATGGTTATATTTTgtagcagatgcccttaaccagggcaactaacaattgttaaaatatatcacatttaatcatacaattacccattgatacagctggatttttactggagcattctgggtaaagtaccttgctcaagggtacaacagcagcgtCCCcaacctgggactgaacccacgacTCTGctctgcaatgcaatgcaaaatgtGACTTCTTATGAAATTGTATATTCAAATTGTTCTTCTTTTGATGGAATAGCTCAGCCTTAATCCTGTGCAAACCTGTGCAGAAAGTAATGGATTCATCAAAGCAGTTTGTATGTATTCTTTCAGTGGCAGAATCAGGTCTGTACTGTGCTTTTGTCTCACACAGGGAATTTCTCAGAGTTCCATAACTATGTATACTGGGAAAATGTTAGGGTaggcatttatttgtgttctgtattttttatttgtaaagataCAAGGCTTTGTGGGTTATTATTAAAgacatatatattgatataagGTGCACTAGAAAACCATGAGTTCTCACTTGTAGGATTGTCTGATGGTCTTCTTTCGAGGACAGCTCTTCTGTTACTGTGGGACCTGTGAGGACTGTCAGTGACTGTCACACCTCAGTCAGTCTAATTAGTTTTGCAATTTGTTCACTTATTACATAGCatatgtacagatttttttctgtCCTCAAATCCTGTTTTCACTGTCAATACGTTCTGGCAGTCACCTGCTTTAACCTGCACTGTGTCAGTATCCTCAGGGCGGCCaggtttacatttcaaacaggttttctgttgtttggtgtccattaataactaagtgatcccgaggatcctatccagtctgtttttgaatgttcccaaattgtctct

Function

GO: NA

KEGG:

id description
K20736 A3GALT2; alpha-1,3-galactosyltransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002051 True 3865 mRNA 0.44 5 2054731 2076937

Neighbor

gene id symbol gene type direction distance location
AMCG00002052 NA coding upstream 22113 2028613 ~ 2032618 (+)
AMCG00002053 NA coding upstream 68342 1985760 ~ 1986389 (+)
AMCG00002050 NA coding upstream 150723 1887229 ~ 1904008 (+)
AMCG00002048 znf362,LOC105894282,LOC106582819 coding upstream 181567 1851995 ~ 1873164 (+)
AMCG00002047 trim62,LOC107756651 coding upstream 245450 1802786 ~ 1809281 (+)
AMCG00002054 NA coding downstream 4296 2081233 ~ 2082288 (+)
AMCG00002059 NA coding downstream 139614 2216551 ~ 2220784 (+)
AMCG00002060 NA coding downstream 171080 2248017 ~ 2251139 (+)
AMCG00002075 NA coding downstream 739820 2816757 ~ 2816972 (+)
AMCG00002074 rimkla,LOC106567384 coding downstream 754747 2831684 ~ 2841963 (+)
G120536 NA non-coding upstream 48817 1996427 ~ 2005914 (+)
G120516 NA non-coding upstream 99370 1897934 ~ 1955361 (+)
G120494 NA non-coding upstream 178203 1874212 ~ 1876528 (+)
G120254 NA non-coding upstream 1386674 667739 ~ 668057 (+)
G120201 NA non-coding upstream 1931563 122542 ~ 123168 (+)
G120563 NA non-coding downstream 96533 2173470 ~ 2174499 (+)
G120564 NA non-coding downstream 97650 2174587 ~ 2176442 (+)
G120565 NA non-coding downstream 107843 2184780 ~ 2184980 (+)
G120566 NA non-coding downstream 125680 2202617 ~ 2203371 (+)
G120602 NA non-coding downstream 148843 2225780 ~ 2225980 (+)
G120518 NA other upstream 113915 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 1061967 682670 ~ 992764 (+)
AMCG00002076 NA other downstream 775217 2852154 ~ 2854127 (+)
G120742 NA other downstream 879971 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 1456877 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 3141893 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 4509717 6586654 ~ 6602608 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1776695 NA non-coding NC_048586.1 CM023240.2 12665789 ~ 12667649 (+)