AMCG00002053


Basic Information

Item Value
gene id AMCG00002053
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1985760 ~ 1986389 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002053
ATGCCGGGCTTGCGAGTGGTCTACTACGTCTTCACTGACAGCCCTGAGAGGGTCCCCGAGATCCAGCTGGGGCCACAAAGGAGCATCGTTATCATGAAGGTGGAGAAGCACAAACGCTGGCAGGACATCTCCATGATGAGAATGCTGACCATCAGCAATGTCATAGAGTCCCACATCCGTCACCAGGCCCAGTACGTCTTCTGCCTGGACGTGGACCAGATGTTTCTGAGTCGATGGGGTTCGGAGGCTCTGGGAGACTTTGTGGCCCAGTTGCATGCTGCCTTCTACAACAAACCAGAAGACAGTTTCACCTATGACAGGAATCCCAAGTCTATGGCCTACATGTATAAGGGTGACCACTACTACCATGCAGCGATCTTTGGAGGCACGTGGGAGAACGTGCAGCGCCTGGCTGAGAGCTGCTACCTGGGCATTATGACGGACAAGCGGAACGAGGTGGAGGCCCTGTGGCATGATGAGAGCCACCTGAACAAGTACTTCTGGATTGTGAAGCCAACCAAAGTGCTGTCCCCTGAGTACTGCTGGTCAACTATTTTTGAGGGTGGCAGCAAACTGCATTTTGCCAGACTCCTCTGGGCTAAAAAGCACTACAATGATCTTAGGCAGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002053 True 630 mRNA 0.53 1 1985760 1986389

Neighbor

gene id symbol gene type direction distance location
AMCG00002050 NA coding upstream 81752 1887229 ~ 1904008 (+)
AMCG00002048 znf362,LOC105894282,LOC106582819 coding upstream 112596 1851995 ~ 1873164 (+)
AMCG00002047 trim62,LOC107756651 coding upstream 176479 1802786 ~ 1809281 (+)
AMCG00002046 trim62,LOC102789653 coding upstream 235096 1750215 ~ 1750664 (+)
AMCG00002045 wnt4,wnt4a,LOC107654388,LOC107565731 coding upstream 276173 1703230 ~ 1709587 (+)
AMCG00002052 NA coding downstream 42224 2028613 ~ 2032618 (+)
AMCG00002051 NA coding downstream 68342 2054731 ~ 2076937 (+)
AMCG00002054 NA coding downstream 94844 2081233 ~ 2082288 (+)
AMCG00002059 NA coding downstream 230162 2216551 ~ 2220784 (+)
AMCG00002060 NA coding downstream 261628 2248017 ~ 2251139 (+)
G120516 NA non-coding upstream 30399 1897934 ~ 1955361 (+)
G120494 NA non-coding upstream 109232 1874212 ~ 1876528 (+)
G120254 NA non-coding upstream 1317703 667739 ~ 668057 (+)
G120201 NA non-coding upstream 1862592 122542 ~ 123168 (+)
G120193 ube2j2,LOC107599097 non-coding upstream 1882487 100119 ~ 103273 (+)
G120536 NA non-coding downstream 10038 1996427 ~ 2005914 (+)
G120563 NA non-coding downstream 187081 2173470 ~ 2174499 (+)
G120564 NA non-coding downstream 188198 2174587 ~ 2176442 (+)
G120565 NA non-coding downstream 198391 2184780 ~ 2184980 (+)
G120566 NA non-coding downstream 216228 2202617 ~ 2203371 (+)
G120518 NA other upstream 44944 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 992996 682670 ~ 992764 (+)
AMCG00002076 NA other downstream 865765 2852154 ~ 2854127 (+)
G120742 NA other downstream 970519 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 1547425 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 3232441 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 4600265 6586654 ~ 6602608 (+)

Expression


Co-expression Network