AMCG00002057


Basic Information

Item Value
gene id AMCG00002057
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2085429 ~ 2119334 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002057
CAGTGATACAATCTTATTTTTCCATGATGCAATTGGTATATTTGGTATAGGTGTATTGAACCCGTAGGAAACCCCAGAGAAATGTTAAACCATtataaaagtgtaaaatgtcTATGGTAAATTTACCAGAGTAAACTAGTGTAAGAGTAAATATCtggaaagtaaataaaaaacaaacaaacaaggtattaaaatgatttaaaagcaCTGATCTAGATGTTATCCAGTGCTGGGCTTCAACGCAGGTCCATCACTTCCATTCGTTCTTTAAAGCATCTACCCGCCTCTGCTGGCCGCACAGCCAGCTCCGGACCCCGCCGCCTCGGCACGGAGCTCTCCCGCCCCCCGACCCTCCTGGGGTTTGACCAGCGGCCCTGGCGGGACCATGGCGCACTCCGGCCTGGAGCTGCTGGCTCGATGACCCATTCAACCAGCGAGAAGAGAAAGTCGAGGATGCAACTCGTTTACCGGGGCAGAGCCCCGGCGCTGGACCGCTACATCACACCACCCACCCCCGAGCAAAGCAAGGAAACGGCCCTACCGGAAACTGGGGGGATGAGACCCGGGAAGACGCGGAGACACGGGCACCTCTGCAGGGGAAGGAGCTCGGCTACAGTCCCGCATCCATCCTCTCGGTGCGGATTACATCCACAAGGCTGTGTCGGACATTTTGAAGGAAGCAGACGTCTTCTTTTTCTAGGACAATCGGCCACCGTAGTCTAACTTACAGAAAGTTAGACAGATCTGCGGCCAGACGCTTGTAAACAGACCCTTTCATGCAGACGTCGGAAGTTTTCTCGCTCGGCTCCGGGGAGACTTGGTGCCAGTGACCGCTGCCTGGCCGGAGCACCGGACCGTGAGACGCCTCGCATCCAGTCCTCTCCGCCTCCAGCGACATCTTTAAAGCCGAGCCGCTGCCGCGGTGTGCGCACCGGGCTGGATGAGCGGAGTTAACGGGCACGGAGTCCGCAGAGCCGTGTCTGTATTGATCTCATTTACGCCACACACCACTTACGGAGTTTTGAAAACATCTATCGGAAATGCAACACGTACATTACACCCTCTTAAGTGACACCatggtacaaaaaaaaacattgtacctCGATATTGTGGAGACTTGTTGTTATATTGTCGCTTGGTTTGCACTGAGCGCTGATTTTGACATGTAATGCATGAAAACTAACAGGATGGGCATTTTGAATAATTGATGAAACCCCGTCTTTCATCTTCAGCTttgatattttcatatttggcCTTCTTGGATATAACATTTTTTCAGATCTGCTTGAGTTACTTGGGCGGATCATTATAATCGATGGGAGAATTTTTCACCATGGATTGGCCGTAGGAGGCACCCGTCTGGAAGGGTTTCCAAAACTCTGGACAACCGCACAACATGGAGCAACAAGAGGAGAGGGCCGAGCTCGAGGACATCGTGCTGCGGCTGAGGGCCGATGGACTGGACCCCGGGGCCACAGCGGATGAGCGTCTCCGTCACCTGTGGCGCCTGTTCCTGCGCAGCGAGGGCAGCCTGGTGTCCGTCACTCAGGACCTGCAGACCCTGCGCACACAGCAGGCCACCGAGATGAAGGAGGTGGAGAACTATGTAGACCACATCCGCAACCTCTCGGAGGAGCGGGAGTCCCTGACGGCCGAGTACGAGCGGGAGAACGAGCAGCTTCGCCTGGACATGCAGCAGCTCCGCATCCATCAAGAGGCCCAGCTCAAGGAGGTGGAGGAGATGCTGGAGCAGGAGGGCCTGGGTGAGATCACGCACAGCAGCCCCAGTGAGCAGATCGCCTACCTGCTGGTGGAGAGGGCCACCCTGTTGGAGAAGCTGGAGGCGGCCGAGAGGAAGCTGGACACGCAGAGCCTCACTGGCAGCCTGAGAGAGGTGCATCTGCAGGAGGAGCTGGACCAGATCCGCCAGACCCTGGAGGAGGAGCTCCGGCAGCAGAGGGAGTCCATGCAACGAACCAAAGAGACCATGAACAAGGATTTGCAGTCCCCAGGCCAGAGTCCCTGGAAGAAGCTCTTTGGAGTTCGCAAGGCAGCACAGAGCACACGCGATGATCCCTCCGCCCACTGGGACGAGCTGAGCGGGGAGCGTCTGGAGAGGCAGCGCCTGGAGCGGGACTTGGACGAGGCGTCTCGCAGGCTGGCCATGGCGCACGAGGAGATCCGCCGACTCAGCGATGAGCTGGACTCTGCCAGGAAGACGCAGGGCCACAGGGAACCACAGCTGGAGAGAGCACGCCAGGAGGTGGAGGAGATTGatctCTTGGACCTCCAGAAAGCCAAAGAACACAACGAGCGGCTGGACAGAGAAATACTGGCCCTGAGGAACCGAGTGCGCTCCCTGGACTCTGAGAGGAAAACATTGCTGGAAATGGATTCAGAGGACAAGGCCTGCCGCCTGCGGGAGCTGGAGCGGCGCCTGCGGAAGCTGCAGCAAGAGCACGAGGAGCTGGTGGAGAGGAATGAGGAGCTGGAGTCGCTGCTGGGAGAGGCGCAGAACCAGAGCAAGGAGGACCGGGACCGCTACGAGTGCGAGGCCGAGGGCCTGCACAGAAAGGTGAAACGCTTGGAGTCCGAGCTGACCAGGCGGAGTCAGAGCACGCAGGAGCCCCCACGGACGGGTGGAGATCAGCCACACACCCCTGGATCTGATCCAGACGTCTATCTTCAGCAGACGCAGAGCAGCAGCCAGGAAAGGGTGGCCGTGCTGGAGGGCCGTCTGATGGAGGAGACGGAGTGGCGGCAGCAGCTGGAGGAGCTGCAGAGGACCCTGGATGAGCTGAGGAGGTTACGGATGGAGGCTCAGACGCTGAGAGCCGGCCTGCAGGAAGGCAATTCTGTGTGTGAGCTGGATCGTGCCAAGAAACGGGTCGACAGTGACCTGGAGATGCAGAGCGCCTCTGCCCGAAGAGGCCAGGAGGACCTGAGGGAGACCAGGGCCCGCCTGGCAGAGCTCAGTGCACAAACTGGGGCGCTGAGGGCTGAGCTCGGCAACCTGGAGCGCGAGCGCAAAGCACTGCGggggGAGGTGGCGGAGGGCCGGGCCCAGCTGGCCACCCTGCAGAGGCAGCTGAACGACAGCGCCCAGGAGAGGCTGCGGCTTCAGGAGGAGAGGCAACGCCTGGGCCTGGAGCTACAGTGTGTGAAGGAGCAGCTGCAGAGCACCAGGCAGGAGGGCCAGAGACtgaggcaggccagccaggaccCCAGCCCGGCCGCATCCGACAGGCCCAAGGATGAGTGCCTCAGCCAGCTGGTGTCTCTTAAAGTGGAGATGGGCCGGCTCCAGACCACCCTGGAGGAAGAGCGCTTACTGGCCGGTCAGCACCAGCTGGCACTGCAGGCCCAGATCAGTGAGGCTCAGAGCCGGACCAAGAAGGGCGAGGAGTGCCGGCTGCTGCGTCAGGACGTGCAGCGGGTCCAGAACCTGTTCACCTCGGCCGAGAGGGAGCTGCGCTACGAGAGAGAGAAGAACCTGGACCTGAAGAGACACAATGCCCTGCTGGACCAGGAGAAAGTCAAGGCTGGCGTGGAGCTGAAGCAGGCCCAGACCAGGCTGGCACAACTGGAGCAGAGCCAGGCGGCGCTGGCGGGTGAGCTGGAGCGAGCACAGGATAGGGCCCGCGAGCTGGAGCTGGACCTGGCCCGCAGCAGCCAGAGCAGGCAGGCCCAGCACAGCCTGCAGGAGGAGCTGAGCGTCGAGAGAGCCCGGCTCCTCAGCACCGACAAGAAGGTGCTGGAGTTGCAGCAGCAGTTGAAGAGCGCAGTGCACCAGTTGCGCCTGGAAGAGACGCGGGCCGGGGAGACGGAGCGCCTGCAGAGGGACAGCAGGGACATGTCGGACACGCTGGCGGGGCTCAGGGCCAAGCTGCATGAGGAGCAGCTCCACAGGAAGCTGCTGGAACAGAGGgaggaggagctgcagcagcaggtCCGGGCCCTGCGGGAGAAGGAGGCTGCTCTGGGCCGGGCCGGTGCCGAGCTGAGGCACCGGCTGCAGCAGCAGGACACGCGTGTGGGCGTGCTGGAGGTGGAGTGCAGCGCGGCCAGAGACGAGCAGCTTCACGGCCAGAAGACCAACCAGAGGCTCTCGGAGCAGCTGCTGTCGAGCCAACAGGAGTTGGAGAGACTGCAGGAAGAGCTTCAGCAGGTGCTGCAGCAGCTCGATTCGCAAATCCGGAAGTACAACGAGAAGCAGTCGCAGTACAAGACCAAGTTACGGAAAGCCAAACAGGTTTTTATGAAGGAGACCACGGACAGAGACTGCCGGATTCAAAAGCTGGAGAACGACCTCGCTCTGGCCACGAGCCTGGCTGAGAAGGAGAAGTGCTGGATCAAGCAGGTCACTGAGGAAAACGAGAAGCTGCTCACAGAGAAACGCGATCTGTTGAAGAAgctgagtgaggaggaggagatcgGCCAAGGCAGCCTGCGGACTGCCTCCACCATCCAGCACAGGGTCAACTTCTTAGAGGAGGAGAACAGGCAGCTGCAGGACAGGACCTTGCAGCTGTGCAGCCAGGTGGCTGCTCTGGAGCGCGCGCTGAGGAACGTGCAGTCGGTGCGCAGCCTGGAGgaactaaaaaaaatatttccttctGAAAGCCTTCTCCTGAATGGCAGTGTTCTTCGGTCTACAAGCCCAAGTCTTGGAGACACACTCGGCATTCTGGACGCCATCCGGAGGGTCAAAGTGGGCGAACACCCCGAGGGCATCCGGTCCTCTTTCGCCGTGCCCCCCCGCTCGGCGCCTTCTGAGATCGGCTACCTGAATGTGAGTTCCCCAGCGGGCCCCGCCAGACCCCAGGACCCCGACGAGAGCCTGAGTCTGGGCAGCGATGAAGTGTGAGGTGCACCACAGGGTACGGGCCAAAGGCCAGCGCACAGTCCTGACCGGATCCTGGACGGCAGCACATGGCCTTTCCCAGAACAATGTAGCGTTTCAGTCAGGATGTGAAAATCTGTCTGATGATGAACATTCTCCCcccacttttttgttttgcgaTTCtgccattcattcatttgttcaCCATTAGATtggct

Function

GO:

id name namespace
GO:0006935 chemotaxis biological_process
GO:0042221 response to chemical biological_process
GO:0097485 neuron projection guidance biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002057 True 5061 mRNA 0.59 27 2085429 2119334

Neighbor

gene id symbol gene type direction distance location
AMCG00002055 NA coding downstream 72996 2010473 ~ 2012433 (-)
AMCG00002049 NA coding downstream 263915 1818740 ~ 1821514 (-)
AMCG00002042 NA coding downstream 637673 1441179 ~ 1447756 (-)
AMCG00002043 NA coding downstream 654745 1420067 ~ 1430684 (-)
AMCG00002037 NA coding downstream 707499 1373743 ~ 1377930 (-)
AMCG00002056 efhd2,LOC107683000,LOC107707677,LOC107591793,LOC107550510 coding upstream 2007 2121341 ~ 2127768 (-)
AMCG00002058 NA coding upstream 42210 2161544 ~ 2161834 (-)
AMCG00002061 NA coding upstream 56146 2175480 ~ 2210300 (-)
AMCG00002063 NA coding upstream 121074 2240408 ~ 2243317 (-)
AMCG00002062 NA coding upstream 138477 2257811 ~ 2265536 (-)
G120574 NA non-coding downstream 89362 1995768 ~ 1996067 (-)
G120573 NA non-coding downstream 91406 1993728 ~ 1994023 (-)
G120572 NA non-coding downstream 91806 1993333 ~ 1993623 (-)
G120571 NA non-coding downstream 92532 1992607 ~ 1992897 (-)
G120533 NA non-coding downstream 96802 1988369 ~ 1988627 (-)
G120589 NA non-coding upstream 43307 2162641 ~ 2162856 (-)
G120601 NA non-coding upstream 104009 2223343 ~ 2224405 (-)
G120683 NA non-coding upstream 576247 2695581 ~ 2696387 (-)
G120743 NA non-coding upstream 833939 2953273 ~ 2953482 (-)
G120746 NA non-coding upstream 866239 2985573 ~ 2986779 (-)
AMCG00002044 NA other downstream 594862 1486551 ~ 1490567 (-)
AMCG00002078 NA other upstream 726048 2845382 ~ 2847937 (-)
AMCG00002085 NA other upstream 801918 2921252 ~ 2931018 (-)
G120748 NA other upstream 876174 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 994108 3113442 ~ 3128440 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other upstream 1054171 3173505 ~ 3186353 (-)

Expression


Co-expression Network