AMCG00002061


Basic Information

Item Value
gene id AMCG00002061
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2175480 ~ 2210300 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002061
CCCCGCACCGCACAGCACCGCACAGCACCGGCCTCCGTCCCTCCGCGCCTCGGCCCGTCGCTTTGGGAGGACGGATCATCTGCGGCGCAAGAAGCCGTGAGTAGCTGGTACTGCGGCGCGTCCGTTACGCCGAGCGAGCGGGTCGACACGGTGCTGTCCATTCCTCGACCCGTTAGAAACAACACCGGCCTAATATAACACACAGCCGAGGGCCTGCCTGTTTTAGGAAGTTGTTGTGGGCAGCACAGCGTGTAGCGGCGCCCAGGGCTCCGGCGCAGAGGATTGTGGGTACAGCCCCAGCTGCCGGACCCCGCTGCGGTACCTTTGAGCCAGGCTGACTGCAGAGGACAATGAAAGGATATCTAAAGACCATAGAGGGTGCTCTCCTGCTTCAACCCAGGACTACAGTCGTGGGCAGACGTGAAGACTGTGACCTGTGTTTACAGAGCGGGGGGGTCGAGGAGCGCCACGCGCTGATCGAGCTGAGTGAGGCCGAGGGCTGCTTCCTGCTGCGAGACCTGAACTCCGCCCATGGCACCTTCGTCAACGACTGCCGCATCCACAACGCCACTGTGCGCCTGGCCCCCGGGGACCAGCTGCACTTCGGCTATGGGGGCCACACCTACGAGCTGGCTGTCGATACCTCGCCCTCGCTCTCCTGTCCCCCAGTGAGCCAGCGATCTGCCTGGCAGAGCCACCTGCAGCTGATTGAGGAGCCCAGAGCGCCGTCCCCCCCAGCTCCCGTCTCCCAGTTGCCCTTCCTACCCAGCCACCCCCCAACTCACAACTCCTGGATCCAGGGGGTCCCCACTGCCGCCCCTCACCCCCCGGTCAGGCCACGGCCGGCCAGTGCAGGAGCTCGGAGAGCAGGGCTGGGGCACCCCTCTGAACACGGGGTGCCCTCCCTCAGGCCAGaacTGAAAACCTCAACCTCCCTGGGGAATGGAGCTGTCCCCCCGAGCCCACTGACTGTAGAGCACCTGCTGCAGGAGAAGGAGGGGAGGCTGCTGAGGCTGGGAGACGAGGTGAGCCGCCTGCTGCTGTTCGAGGCCGAGTCGCGGCGCAAGGACGCGGTGATCGCCAGCCTGCGGGACGAGatgatGCAGTTCCAAAAGGACTCCAGTGAGGCGCCGCAGCACAAGGCCCTCAGTGAGAGAGACCTGCAGATCACCAATCTGAAGAACCAGCTGGAGAAAGTGAAGAAAGACAACAGCATGTCAGCAGGGCTGGTGACCAGTCTGCAGAGGGACCTGTCTACTCGGGACAAGCAGGCCCTGCGCTTGACCACGGAGGTGGATAAGCTGCGCCAGGACGTCCGCCACAAGGATGCGCAGCTGGGCGCCATGTCCGCCAAGTTCTCTAAGATGAGGGAGGCCAAGAAGCACGAGCAGGAGTTAGTGGCACGGGAGAAGGAGGTCCTCGCGCTGCAGAAGAGGGTGGAGGAACTGCAGCAGAAGCAGACGGCGATACAGTCGGAGCACGAGCGGTGTCTCGCTGAGAGGGACACCCTGAGCCACGGCCTGGCAGAGGCATCGCAGGTGCAGGCGGAGCTGCGAGAGGAGCTGCAGAGGGGCAGGCAGCGGCTGCAGGAGCTGGGCCGCCGGGAGCAGGGCGTCAGGGTGGAGCTGGAGCAGACACAGGCACGGCTGGAGCGATTCCGCAGCCGCATCATTCAGGCCACCTACACGGCCCCCGGAGTCTCGGCCCCTCAGGATTCTGTGTCGGACGAGCAGGTGATAGAGCAGATGTCGGGCATCattgaggggagggaggagctGAAGGCCAGACTGCAGGAGCTACAGGAGCAACTGAAGGCCAGGGCCTCAGAGCAGGACAAGATGGCTTCCGATACGGAGCCGTTGCAAAGGGCGTTGCAGGAGTGCCAGTCTCGAGCCCAGGGCGCCCGTTCTGTCCCGGCACTGCAGAGGGAGGTAGCTGCTCTGAGGGACCTCTGCGTCCCGGCTTCTCTGGCCTGGGTTCAGTCGGCAGCCCTCGGCTTCCTGCACACTCTGCTGTCATGGCATCAGGAGGCAGCCCAGGCCCTGCAGGATGCTGAGATAGATGCCACAGACTCAGAAGGAGTCCCTGTCTGTATCCGGGCCCTGTGGCAGCAGCGCCAGGaccgagatggagagatcaggaACCTGCAGGCCGAGCTGGAGGCGCTTCGTGGCTCTCGGGATGGTGAGGTCCAGGCCCGGGTGGACGCCCTGAGGGAAGAGCAGGACAGGAAGCTGGCGGCGCTGAAGGAGGCGAGCGAGCAGCAGAGCCGACAGctgctggaggaggCGCTGCGGGCAGAGAGACAGCGGATGGACGAGGCCCTGACCGAGGAGCGCAGGGGGCTAAAGCGCTTGGAGAGCCAGCATACAGAGCTGACGCAGGCCATGGAGGCCAAATGCCAGGAGGAGGAGAGGCTGCTGCGACGGCAGGAGGAGCTGAGCCGGGAGCTGGAATCCGTCAGGAGGGCCGAGGCCGCTCTGCGGGAGGAGGCGCAGGGCCAAGAGGCCCTGCGGCTGGCGGAGCTGCAGGcggcagaggagagaggggcgCAGGGGGAGAGGGAGCGGCGGCGGGAGCAGGAGGCGGAGTACAGGGAGCAGGTCCGGCAGCACGCCCGCACCATCGTGGCACTGGAGCAGCGCCTCGTCAGTGTGTCACGCAGCCAGCAGGCCGGGGAGGAGGAGCGGGTTGCGCTGAGGGCCAGGCTCAGAGAGGCTGAGAAGAGGCTGGAGAGCAGCGCGCCTGTCCTGTCTCCTGCCCCCCCGCTGCCGGCAGTGTCCCCCGAGCTCATGGCTCTGGAGCAGACCTGCACTGCGCTCAGGACTGCGGAGAACGAGGGCCCGAGTGACCCCGTgtgtcctctcctctccagggCCGAGCTGGCCGACACGCAGCGGGAGGCGTCCGCACACCGAGACATCATCGTGGGGCTGAGCAGGGACCTGGCCGGGGCCAACGCCAGGATGTCCGACATGACGGGGGAGCTGAGTGAGAAGCAGAAGCTGGACCTGGAGCAGACCAGGGCCCTTGTGGTCCAGCAGAGGGGTGAACTGAGCATGCTCAGGGAACAGCTGGCTCAGATGTCACAGCTGGTTGACCAGAAAGGGGAGGAGCTTCGAAGAGTTGGGGATGAGCTCAGGGGCTGCCGGgctgagctggagcagcagacAGGCGTTGTGAGGGAGAGCAAGCTGAGGTCTGAGCGGACCCAGGAGGACAGGGGGGCGAGCAGTCCTGCCCCCCCACACTCTCCTCCAGGCTTACAGGACACAACAACTGCCTCTGACCTGGCTGATCAGGGGTCAAAGTGCAGAGGTCACCGGCACGAGGAGGTCATCCAGCGTCAGAAGGAGGCCTTGGCGGAACTGAGAGGCAGGATCAAGGCCCTGGAGCAGACAAGACCTCTGGTGTCTCCCCAGGGACAGGGCGCCCAGCAGGTGGCGCTGATGCGGCGGGAGCTGAGTGAGCTCAAGGCCCGGCAGGCAGCAGGAGGTGGGCTTAGCAACGGGGCCGCCGAGGAGCATTCTCCCTCCTGCAAGGCGCAACTCCCCCTGCCCGGTGTGTCGTGTGAGGAGGCCCTGGAGAGGACTGCCCGGCTGGACCAGTCCGAGGCTCTGGACCTGAGTGAGAGGACGTACCTGGACCTGGTCCGGGCCCTGAGTGCAGCCCTGGAGCTGGGCGAACTGTCGGGCTGCACCTCCCTGAAGCACGTGCCCCAGGACGAGAGGGACAGACTGGGTGTCCAGCGGCAGCAGGACCTGGAGCTCCTCCGCACCCGCCTCCGCCTCCTGCACGGCCAGTCCCAGCGCAAGGAAGAGCTGCTGTCCGAGTACCAGGCCGACCTGCACCGGCTGCGGGAGAGCCAGGCGGTGGGGCAGCGGCAGCAGGCTGAGCTTGACCGGCTGAGGGAGGAGCTTCAGGGCCAGCGGCAGGAGAGCGGGCTGCTCCGAGAGGCCCTGGACCGCACCCAGCGTCGCCTGGAGCAGGAGAAGGGACTCAACCGGGCCATCAAGGAGCGCAAGACTTTCCATCTGGAGCAGCTGGACAAGAGGACTGTGAAGACCCCCACACACAGCTGTGCGCAGGAGGACATCCACGGCAAGGGCTCAGCCAAGAAGGCCAGTCTGCAGGGCAAGCTGAAGAAGAAGGACTATGAGATTGAGGCACTGAAGAAACACCTGAGGAAGCAGGACCAGGAGCTGTGCAGCACCACCGCCCAGCTGGTCAACCTTCAGAACAGCCTGGTACGCTCGGAATCTCACTGACACCCGGGACTGCATGCCCACAGATGCTCACAGACCCCCATGGACCCCCACAGATTCCCACAGACCCCTAAAGACACCCACAGATGCACAGGGGGTTAAAACACCTTTACTCATCTAGCTCTCATCCTGCACCGAGTCGTTTTCAATGACAGAGGGCACGTGGGCCACGCGGCGCTCTCCCTGCGCTGCCGGGGCAGTAATGTGAGGCGTGTTGCGGCAGGTATGTTGTACCGGGGGCAGGGCAGGCTTGCTGTATTATGATAAAGGCATTGCAGAGATGCTCTCGGGTTTCTGTCTGCAAGAAAACAACTCATTTAGCACTTTGTGTAAATGcttagtttaaaattaaaagggtcttgccaaaatactgaaatgttgAAACTGGAATCTAATCGCATTGCCTTAATACACTCACCTCATCTATGATGCTGATAATGATGTTTGTCTCACCCCCTGCATGGCTGGCACTCTGCACGCTGTTTTAAAGTGTCTGCTGTCAAGGTCGATTAAGCCGATTCTGCAGTGCGTCACAGCCCTGCTCAGAGGTATGAGAGTCTTATAAACAATGTAGGCAATGTCTCATAATTGAATGCCGGTAAATTGGGTTGCAAATTGCAGTCATTGCAGGagatcaatgttttgttttgaaatgcaagtaTAGGTGAGGGTGTAACAGGAGAAAATTGCCTTTTGACAGCTCATGTCGTGCTGCAGCACTTTCCAAATTCAAAAGCATAAAAAGCACTGACTGCCTAACATTGGgtttttatgattatatatatgtttaattctACATACTATATGAGAACAGAATTCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002061 True 5087 mRNA 0.62 31 2175480 2210300

Neighbor

gene id symbol gene type direction distance location
AMCG00002058 NA coding downstream 13646 2161544 ~ 2161834 (-)
AMCG00002056 efhd2,LOC107683000,LOC107707677,LOC107591793,LOC107550510 coding downstream 47712 2121341 ~ 2127768 (-)
AMCG00002057 NA coding downstream 56146 2085429 ~ 2119334 (-)
AMCG00002055 NA coding downstream 163047 2010473 ~ 2012433 (-)
AMCG00002049 NA coding downstream 353966 1818740 ~ 1821514 (-)
AMCG00002063 NA coding upstream 30108 2240408 ~ 2243317 (-)
AMCG00002062 NA coding upstream 47511 2257811 ~ 2265536 (-)
AMCG00002064 NA coding upstream 72605 2282905 ~ 2295720 (-)
AMCG00002065 kazn coding upstream 100494 2310794 ~ 2319970 (-)
AMCG00002066 NA coding upstream 257955 2468255 ~ 2468604 (-)
G120589 NA non-coding downstream 12624 2162641 ~ 2162856 (-)
G120574 NA non-coding downstream 179413 1995768 ~ 1996067 (-)
G120573 NA non-coding downstream 181457 1993728 ~ 1994023 (-)
G120572 NA non-coding downstream 181857 1993333 ~ 1993623 (-)
G120571 NA non-coding downstream 182583 1992607 ~ 1992897 (-)
G120601 NA non-coding upstream 13043 2223343 ~ 2224405 (-)
G120683 NA non-coding upstream 485281 2695581 ~ 2696387 (-)
G120743 NA non-coding upstream 742973 2953273 ~ 2953482 (-)
G120746 NA non-coding upstream 775273 2985573 ~ 2986779 (-)
G120754 NA non-coding upstream 798601 3008901 ~ 3020156 (-)
AMCG00002044 NA other downstream 684913 1486551 ~ 1490567 (-)
AMCG00002078 NA other upstream 635082 2845382 ~ 2847937 (-)
AMCG00002085 NA other upstream 710952 2921252 ~ 2931018 (-)
G120748 NA other upstream 785208 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 903142 3113442 ~ 3128440 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other upstream 963205 3173505 ~ 3186353 (-)

Expression


Co-expression Network