AMCG00002068


Basic Information

Item Value
gene id AMCG00002068
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2635269 ~ 2645414 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002068
GCCGCCCGAGGGTGACCAGGCAGGGAAGAGGATGATGTCATCTACATTGATGGCAACCACATGGGCTCAGCACCACCGGGAGCCCAGCAGTAAGTCGATACAAGTACGAGCACAACCACTTGCCAACCTTGATGTAGAGATCAGGGTGGGAGTGTTTGAAGTGCAATCCAGGAAGAAGCTTTTGGAGCGAGCGAAGCAGGGCGGCGTGGAGGGGTTCAAAGGGCAGCAGCAGACGTCTGATCCCGAACGCGTCATCACAGAGATGCGGGAATCGGAGGACGGTCCTAAAGAAGAGGATGAGAAGCCTTCCCTTTCCTCGGAGCAGGTGTCACGGCAGACCTCTGCGTCTAAAGAGCCGGCCGAGCCAGAGCAGCTCCCCTCGGCTGTGAAGGAGGACGCTGCGCCGTCCCACACCCCGGAGGTGCTGGCAGAGGAGGAagtggaggaggaaggggaagacgaagaggaggacgaggaggaggaggacgaggaggaggaagagtacGAGGAAGAGGGGGATCCAGGGAAAATGGCAGAGGAGCAGCTGCCAGAGGAAAGTTGCCCCAGCTCTCCAAAATCAGAGATCATAGAAACGGAAGAGCCGCCGGATACAGAGCCCAGCCCTCCAGGGTGTGAGGAGGAGATGTCCGAGAGGCTCCAGCAGGAATCCACGCCGGGGTCACCACTGCAGAAGCTCGACCACGACCCCGAGGGCGAACCCCCCGGCTCCTTCCTGTTCCCGTGCCAGCACTGTGAGCGCCGCTTCACCACCAAGCAGGGTTTGGAGCGCCACATGCACATCCACATCTCCGCCAACTGCCACACCCACACCTTCAAGTGCCGATACTGCGGCAAGGCCTTCGGCACACAGATCAACCGGCGCCGGCACGAGCGGAGGCACGAAGCTGGGCCCAAGAAGAAGCCGGGCTCACTCTCCGGCACCGCAACCTCTTTCAGCCCCCCGCTGCCGACCGAGAGCTCCAGCCCGGACCTCGTCACTTCCTCGGGCAACTTCATCATCATGGGCGCCCAGAACGGCAGCGATCTGCAGGACACCTCTGAGTCGGAAAAGCCGAGCCCAGCGATGGAGACCGAGCGCACCGTCGTCCTGGATGAGAACGGGGAGCCGAGAGAGCAGCACCCTTGCAAGTACTGCAAGAAGGTGTTTGGCACCCACACCAACATGAGGCGCCACCAGCGCAGGATCCACGAGCGCCACCTGCTGCCTAAGGGTGTCCGCAGGAAAGGCATGCTCTTGCAGGAGGCGCaaccccagcagcagcagcggcctgCACCCCCACCGGAGGAGTCTCCCAACCCCAGCCCTCCGCCGGTCTACGTGCCCAGCGGGGATTTGGAAGATGAGGGGGATGCTGAGGAGGAGTACATGGTGGACATCTCCAGCAACATCTCGGAGAACCTGAGTCTCTACATCGACGGGAAGATCTTGTCCACCAGCACGGTCAGCACCTGCGAGGTCATCGAGGTCGACCCCGGTTCCGCCACGCTGTTCGGCCTGGATGCTCTGATCATCAGCCCCGACAAGGTCACTACCACCACTCTGAAGGTGGAGACCACCAGTTGCATGGTGAAGGAGATTCCCAATGGTGGCCAGGCAGTCCTCAAGAGAAGAACTGCCACCCCACCTCTTCTCCCCAAAATCAAGACCGAGGTGGAATCCGAACCCATCACACCTTCCTTGCCTtcttcctcgtcctcgtcctccacctcctctTTGGTGAGCACCATCTTCCCTCAGGCCACCGAGACTTTAACCTTCCAAAAGGAGAAGGCAGTTTATCTGTCCCCAAAGCTGAAGCAGCTCCTACAGACTCAGGACAGTCATAAGCCGACCTTGACTCTCTTCACTGATGGACATAGGCTGGGTCCTCCTCTCATGTCCGTCACTGCTTTGCCTGCCGGGTCGGGGAGGTTCAAGAGGAGAACGGCCTCCCCTCCGAACTCCCCACAGCACAGCCCTGGCCTGAGAGTGGACACGGGGAAGACCGAGACCGGAGCCCCTTTTGGACTCAAGGTACCCAAGCTGGAAAGCCACTGCAGCTCCCCCGCCTGGAGTCTGTCCAGCAGAGACGAGAGGGACACTCTGAGCCCACTTGGTGCGGATGCCTTCAAGGGCTCTCCCGTAGACTGGTCGACTGGTAGAAGCGGTGGGAGCTCCTGCAACCAGCAGCCACTGGACCTCTCCAGTGGGGTCAATAAGAGAAGTGAGGGCGGTGGGAAGGGGCCGGGGGAAGCAGTATTGGATCTGAGCATGCACAGAAAGCCTTCGCCTGAGGCGGAAGGGAAGGGTAGTACCTCCCCCCAGCCCCTTGTCAAGAAGAAGAAACCCAACACAAGCATGCTGGAGAAAGTGTTGATGAACGAGTACGGAGGCTTAGAGGTGCCGGCTGACGAGAACCCTGCTGCACTCGATAGCCCCAGCGGTCTCTCTGCGGTTGATCTGGCCACAGACGCCCCTCCTGATTCCCCCTCCCCAGCCCCTGAAGCACTTTCACCCGAATCTAGTCCCCCTTCTACACTTCATCCGCCCCCTCCCTCACTAACCCCCGTGACAATGCATCCCCCCTCCCCTGGCACCCCGGCCCTAGCTTCCCCCACCCCGCCTCCGCCAGTGCTACCCACCGCCCCGTCTCCCCTCCCGGCTCCCACCTCTCCTGCTCCCCAGTCGTCCTGCTCCCCAGCCCCGTCTTCTCTTCCGGTCCTGTCACCTGAAACTTGCCCCAGTCCAGTAAACCCGAGTCCCAGGGATTCCCCACTTTCTCCCGATTCAGATCCCAGTCCCAGACTCCTAGATTCTTTGCCAGATGTTATCAATCCTAACCCTGAGCCTGGAGATCCCAGTTCGAATCCTCTAGATCCTCCTGCACCCTCACTTCCACCTCCCACGTCTGCAGATCCTTCAACAGGTGAAGTAGAACTCCCCCCTCCCACACTGGATTCCCCAAATACACCTGAAGAGCAGTTATCTCTTCCTGTGGGTCCCTTAGCATCTTTACAAGATTCTAGTATTAGTTCTGCAAGTGGTCCCCCTAGTGCAGAGTCTCCTGTACAGCTCCCTTTACAAGATCAAGACCTAGGCCTAGATCCCACCCCTGTTACACACCAGTACGGTGCTGTGGAACCTTCCCTGCATCATGCCATCATACCAAAGCAGAGATCAGAACCAGAAGAGCAGCCCCAACCCTCCCCGTCCCCATCCCCTTCCCATCCACCATCCCTGGATCCGCCTATTCTTACATCATCTATCCCAGACTCATccctttcacccagttctcttGCGCCCTTGGAATCGGATAGTCCACCACTTCTAGTCCTGCCCACTCATCCGGCAACCTTCATCATCAAAGAGGAACCCATGGATGAAGAGATGCCGGACGCTGCGGTCAGCCCTGCTGCCGTTCCCTCCGCTTCTCCTCCTCCCGCAGCCGGCGAGCCTCTGAAGACTTCCGACAAAGAAGAAGCCCCGCAACCAGAGACGTTCTGCAAGAGCTTCGTGTGCAACGTGTGTGATGAGCCGTTCCCCTCCATCAAGGAGCTGAGCCGGCACATCGCCGAACACGCGGACGAGTGGCCCTTTAAGTGCGAGTTCTGTGTGCAGCTGTTCGGGGATGCCGGGGCCCTGCTAGAGCACCGCTCGACTCTGCACGGCGTCGGCAGGATCTACGTTTGCTCCACGTGCACGAAGGAGTTCGCCTTCCTCTGCAACCTCCAGCAGCACCAGAAGGATCTGCACCCCGGACAGGACTGCACGCACAAGGAGGTGGAGAACGGCAAGCTGAGGCCACAGAACTACACTGACCCGACCCGCGCCAGCCTGGAGCCGCCTCCCTCCAAACCTGCTAGCGAAGCTGCCTTTGAGGGCAGTGCCCCATCTTCTCAGCCGAGCCCTGAGGTccataaagaagaagaagaagaagaggaggaagaggaggaggatgaagaggaaGATGTTGACAACTCCACTGAGGAGCTCTACACTACAATAAAGATCATGGCTTCTGGAGGGGGCAAGCCCAAAGGTCCAGATGTGCGTCTGGGCATCAACCAACACTACCCAAGTTTCAAGCCGCCCCCCTTCCCCTACCACAACCGCACACCCACCGGCTCGGTGGCCTCAGCTACCAACTTCACCACACACAATATCCCACAGACCTTCAGCACTGCCATCCGCTGTACGAAGTGTGGCAAGAGCTTCGACAATATGCCCGAGCTGCACAAGCACATCCTGGCGTGCGCCAACGCCAGCGACAAGAAGCGCTACACCCCCAAGAAGAACCCCATCCCGCTCAAGCAGATCGTAAAACCCCACAATGGAGTACTGGTGGCTGCCACTGGGGCCAACCCCTCTGGGCAGAACGCCTTCCGGAGGATGGGCCAACCAAAGAGGCTGAACTTCAGCCAAGAGCCCTCCGCCAAGTTGAAGCTGAATGCCctgaacaagaagaaaaacCAGCTGGTCCAGAAGGCCATCTCCCAGAAGAATAAGTCGGCCGCCACTGCAAAGAAATCCTCCAGCCTCGCCCTGGAGGACCAGGAGATGCACGTCTGCCCTCACTGCAGTCGAGAGTTCACCTACCTGGGCAGCCTCAACAAGCACGTTGCGGTCAGCTGCCCCAGGAAGCCACCTTCCAAAAGGGCCAAGAAACCTGGTGTCGGTGGGCACTCTTCCCAAGAGAAGAACGGGAATCTGCGCCGACGGACAGCTGACTCTGAGATCAAGCAGCAGGGAACGCAGGCCAAGCTGGGCAAGACCAGGGCCCGCACTTCAGGGCCTGCGACCAACATTATCCTGCTCGCCAAACCCCAACCCAGCAAGGTCAAACCCACAGTGCCCCAGGCCCGGCCGAAGAGGCCCGCCTCCTTCCAGGCCACCTCGGTCCCGTACAGTAAAAAAAGCAGGACTGTGTTCAAGGGTGGCTCCCAGCTGCCACCACCTCCTCCCCCGCTGCCCGCTCCGGCCGCGCCCGGCCACCCCTCGCAGCGGCAGCTCATGAGGATGCAGCGCGGCGGGAAGGAGCTCCCGACCAAGAGAGTGGTGGAAGTGAAACCACACGTGCAGTCTCAGCAGCCCCAGCAGGCGGTGAAGAAGGAGGAGCGGTTCTCGGTGAAGACGCgtgagagagtgggggggcCGGTCACCCGCAGTTTACAGCTGGCCAGCAGCGTGAACACGGCCGACGTGAAGACGGATGACCTCTCGGGCCAGGAGTCCAGGGAGCCTCAGGTAGACATATGCATATGCATGtcccatttaatt

Function

GO: NA

KEGG:

id description
K11432 PRDM2, RIZ; [histone H3]-lysine9 N-trimethyltransferase PRDM2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002068 True 5278 mRNA 0.60 4 2635269 2645414

Neighbor

gene id symbol gene type direction distance location
AMCG00002067 NA coding downstream 102509 2522750 ~ 2532760 (-)
AMCG00002066 NA coding downstream 166665 2468255 ~ 2468604 (-)
AMCG00002065 kazn coding downstream 315299 2310794 ~ 2319970 (-)
AMCG00002064 NA coding downstream 339549 2282905 ~ 2295720 (-)
AMCG00002062 NA coding downstream 369733 2257811 ~ 2265536 (-)
AMCG00002070 NA coding upstream 8404 2653818 ~ 2662801 (-)
AMCG00002071 NA coding upstream 32970 2678384 ~ 2680488 (-)
AMCG00002069 NA coding upstream 37288 2682702 ~ 2689587 (-)
AMCG00002072 foxj3,LOC103362994,LOC101077580 coding upstream 55824 2701238 ~ 2727268 (-)
AMCG00002079 NA coding upstream 210644 2856058 ~ 2857127 (-)
G120601 NA non-coding downstream 410864 2223343 ~ 2224405 (-)
G120589 NA non-coding downstream 472413 2162641 ~ 2162856 (-)
G120574 NA non-coding downstream 639202 1995768 ~ 1996067 (-)
G120573 NA non-coding downstream 641246 1993728 ~ 1994023 (-)
G120572 NA non-coding downstream 641646 1993333 ~ 1993623 (-)
G120683 NA non-coding upstream 50167 2695581 ~ 2696387 (-)
G120743 NA non-coding upstream 307859 2953273 ~ 2953482 (-)
G120746 NA non-coding upstream 340159 2985573 ~ 2986779 (-)
G120754 NA non-coding upstream 363487 3008901 ~ 3020156 (-)
G120760 NA non-coding upstream 395134 3040548 ~ 3042500 (-)
AMCG00002044 NA other downstream 1144702 1486551 ~ 1490567 (-)
AMCG00002078 NA other upstream 199968 2845382 ~ 2847937 (-)
AMCG00002085 NA other upstream 275838 2921252 ~ 2931018 (-)
G120748 NA other upstream 350094 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 468028 3113442 ~ 3128440 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other upstream 528091 3173505 ~ 3186353 (-)

Expression


Co-expression Network