AMCG00002073 (ppcs)


Basic Information

Item Value
gene id AMCG00002073
gene name ppcs
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2857667 ~ 2861786 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002073
GTGTCTGGTGTTGATGTTCTTTTAGACCCGTGATCAACACGATGGCGAGCTCTGGATCCCCTTCTTCCCCCACGGCGGAGGGCAAGTTGGACGTGGAGTTCACCGTGCCAGCGCAGGTGGAGGTGGCCGGTCACCTGATGGCGGAGTTTGCCCAGCGCCACTGCTCCGCGGGCCGCAGGGTGGTCCTGGTCACCTCTGGCGGCACCAAGGTCCCGCTGGAGTCCAGAACGGTGCGCTTCCTGGATAATTTCAGTAGCGGGCGGCGGGGCTCTTCTTCCGCTGAATATTTCCTGGACTCGGGGTACGCGGTGATATTCTTGCACAGGCACCGCTCCCAGTACCCCTACTCCCGGTGCTACGCTGGGGTCAACCTCCTGGACGCTCTGCTGCTGCAAGGGGGCGAAGGCGGCTCCGGCCAGGTCGTGGCGGACACCGGGGCTCTGCCGGACATTGCCGCCGTGCTGCGGCGCTACCAGGCAGTGAAGGACGCCGAGCTCTTGCTGCCAGTGGAGTTCAACACACTGTCTGAGTACCTGCACCTGCTGAAGGCCGCGGCGCAGGCTCTGAACCCCATCGGTTCCAAGGCCATGTTTTATTTGGCTGCTGCCGTCTCCGATTTCTATATTCCTGCTTCAGAAATGCCTGAACACAAGATCCAGTCCTCCAACGGACCCCTGCAGatCAGTATGAAGATGGTGCCCAAGATGCTGTCTCCGCTGGTGAAGGACTGGGCCCCCCGGGCCTTCGTCATCTCCTTCAAGCTGGAGACCAACCCCTCCATCCTGCTGGAGCGGGCCCGGCGCGCGCTCGACACCTACCGGCACCAGGCCGTGGTGGCCAACGTGCTGGACACGCGGCGCGGCTTCGTGGTGGTCGTCACGCCCCATACGCAGGTGGAGCTGGCCCTGAGCGAGGACGAGGCACGGCAGGAGGTGGAGATCGAGGAGAAGATCGTGGCCAACCTGACGGCCGCCCACACCGCCTTCATCGAGGACTGAGGCACCggggggcggggtgggggggtagagaGGCATGTTAGTGTCGAAAATTGCACTTTGTGATCGGTTAAATAATTGAAGATCTGGGAACAGTCGAGGCCGAGCAGGAGAGACGCATTCAACCCGCAGTCCCCACTCATTAACGGGAGCATTAAAGCTTCATAAGCCCCCATCGCAGCACTTGCTTAGAGAACGGCAGTCCTCAGCAGCCTGAATTATTGAACGACCGCGCGGCGCAGAAACTGGGTCGGCGGCTCCGGATGGGTCAGTCATTAATCATATCGGTGCCATCTTTGTTTCACGTCAGCCAGTCCGAgcttttgttaaataataagtGAGTAAATGAGCAGGGAGCTTGTGTGAAGAGCGTGAAGGGGTACAAAGGTGAAAAAGCCAGTACATCAAACAGGATACGGCCACAGAATCAAGAGCTTTTATTCCGTCCTCTGCAATGGCTCAATTACGACTCTGGCTTTCAGGTAGGCGGCTGCTTCACTATTTATTCACGGGGTGCGTACTTTAAAGATGGAGGAGAGACACTTACCCAGTCCTGTAGCGTCTCGCTGCCGAGGACAACCTGCGACCCTTCACTGAACCCGTCCTTAATGCCAATCAGTCGGAACAGCGCTTTAAGGAGCTCATGGTGGTACAGGCAAGCGACTCCGAATACCACAAGCGATCAGCAGTCCTTGATGAGCAGGAGCAGCTCTTTTGTTATGAATGCTTGTGTTACGGATATCTGCAATAATGTACCCAGCACAGTATGAACTAACAAGCAAAGAGTTGCTGAGCTGCAATTTAGTTCTCATGCAGCATACATGGCCATCTAGAAAGGCTCAGACCGAGGTGTAACTGATTAACATAGCTTTCTATCCATTTGAGCTGGGGTGTCTGATAGCATTATAAGAAATACACAGATCTTTTGTCGTGCCATCTAAATAGTTAGGAGACTCGATTTTTTTTTAGATCGTGCGCTGAAATATTTAGCCAAACCAGGAAGTGAGAGATGAAAAATACATCCCAATAACCCAGGAGAAACAGTTTTCTGCACCAATACATCCCTGTGTACAAATACGCGATTTCTGCTTGTAATGCTATAGATCTTGTCACTCTTTGACCTGAAAGACAGAGACACGTTGGCGTCTCGGTCTCGGGGATCCGGTACTGCCATGTGCCACTCTTTGACCGGGGCCCTAAGATTAGAAAGCTGTCGCGGATCACCAATCCTCTTTGCCCAGATACGGGCTAAAGCGATTAGAGCAAGGCTGTGATCCGAAAGCGGCAATCCAATACAGAGGCCTTGAAGTCATCGAGTAAGACGCGGGAGAACAGGAGACCAGGCTGCGGTGGAGTGAAATGCCGAAGGGCCTTAAGACGCGTGTGTGGTGCCCCCACGGTTAGAAGCGCTGTGACTCCCTGATACAGACAGGAAAAGGCTggggatatttaaaatattgaataagtAAACTAGTGTATCTTTTGGATGATAAAGCCGATCAAGTAGAGCAATACTAAGAGCAGAagtaatattaatttgaattgacATTTAGTTTGCTTCCGAAACTCTTCTTATAGGAGTAGCGCCGTGTTAACCATTCTGAagcttaaaaaaatgctgtaccCCAGAATCCACTTAACTTAGCTTCTCAGCAGATGCTATTTTCACTGTTAATAGTCCAAGCTGAGGGTGTCAGTTCTGCTGTAATGAAAACCTGATGAGAATAAATGTACAGTTAACTTTATATTTGCTAAACGGATGTAAAAATATCCTCCTGAAATCTATAAAGAGGAGATGTATAGCAATCTGCTCAAACTCAATCACTGCCTGCCTTTGTTCAGTTTAAAGCATGCCATTTACTCTATGTACGCCCCAAAATGTATTTCCCTTTATCACAACCATCAGGGAAAGCTGCTCTGGAGcaatatgtttgtttctgtaaattCATCCGGGGGGAGATCGCATAATAAACGGCACAATCCCTGAAAAAGCTTTGGTAAGATCCATACCGTTCTACATCTTAACTCAATGGGTGACGTGTTAATGAATGGCTTATAGTTTCTGCAGGGAGCAAAGGGTTTCAGTTTGAGCAAAACTGATTTATGACTTGAAAAACTGTATAATCTGTCCATACACTGACAACACTAGGACACCTGCCTCAGAGAGCCTGACTGGAGGTTTATAGTGTGACCCGAGGGACCCACTCATGAGGGCCTATACTACCTGTTAATTCATTTATGGTTAACTTGCAATTTAGCAGTTAATACAGGGACCAGGTATTACTCGGTGTAAGAGCAGTTCTGACTTGTGACCCACACTGAATAATTCATTCCCTTTCCTtttctaaacacacagccaggcaATGAATACAGGGACAGCAATTCAGTATCGTCTCACCTTTAGCTGAACCTTTGCTCCGCATCGAAGAGCTGAACAGACACtctatacacagacacactggagGATTACTACGCGTGGATTCAGTTTAGATTACACTTAACCTTTAGCTTAATTCCTGCTATTTATTGAGGAATACGGTGCCTTTGATGTTGAATACTCGTTTCAGAATTAATACTTACTGTATACAAAACACGGGACCAGTAGAGGGACA

Function

symbol description
ppcs Predicted to enable phosphopantothenate--cysteine ligase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human PPCS (phosphopantothenoylcysteine synthetase).

NR:

description
PREDICTED: phosphopantothenate--cysteine ligase isoform X3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016874 ligase activity molecular_function

KEGG:

id description
K01922 PPCS, COAB; phosphopantothenate---cysteine ligase (ATP)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002073 True 3607 mRNA 0.50 3 2857667 2861786

Neighbor

gene id symbol gene type direction distance location
AMCG00002074 rimkla,LOC106567384 coding upstream 15704 2831684 ~ 2841963 (+)
AMCG00002075 NA coding upstream 40695 2816757 ~ 2816972 (+)
AMCG00002060 NA coding upstream 606528 2248017 ~ 2251139 (+)
AMCG00002059 NA coding upstream 636883 2216551 ~ 2220784 (+)
AMCG00002054 NA coding upstream 775379 2081233 ~ 2082288 (+)
AMCG00002080 NA coding downstream 45079 2906865 ~ 2910535 (+)
AMCG00002081 LOC106572212 coding downstream 85680 2947466 ~ 2952329 (+)
AMCG00002082 NA coding downstream 105579 2967365 ~ 2986779 (+)
AMCG00002088 ybx1,LOC100194660,LOC107733967 coding downstream 133592 2995378 ~ 3004718 (+)
AMCG00002087 NA coding downstream 163278 3025064 ~ 3040023 (+)
G120674 NA non-coding upstream 161260 2696064 ~ 2696407 (+)
G120602 NA non-coding upstream 631687 2225780 ~ 2225980 (+)
G120566 NA non-coding upstream 654296 2202617 ~ 2203371 (+)
G120565 NA non-coding upstream 672687 2184780 ~ 2184980 (+)
G120564 NA non-coding upstream 681225 2174587 ~ 2176442 (+)
G120692 utp3,LOC102785935 non-coding downstream 129 2861915 ~ 2866024 (+)
G120755 NA non-coding downstream 178781 3040567 ~ 3042435 (+)
G120763 NA non-coding downstream 181854 3043640 ~ 3046804 (+)
G120774 NA non-coding downstream 230008 3091794 ~ 3092899 (+)
G120778 NA non-coding downstream 237821 3099607 ~ 3100142 (+)
AMCG00002076 NA other upstream 3540 2852154 ~ 2854127 (+)
G120518 NA other upstream 916851 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 1864903 682670 ~ 992764 (+)
G120742 NA other downstream 95122 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 672028 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 2357044 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 3724868 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 4532014 7393800 ~ 7411230 (+)

Expression


Co-expression Network