AMCG00002074 (rimkla,LOC106567384)


Basic Information

Item Value
gene id AMCG00002074
gene name rimkla,LOC106567384
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2831684 ~ 2841963 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002074
ctgcGTGTGGAGCAGGAGGTGGTGACCTCATACCCACAGGTAGCCGTGGTGCGGGTGCCCACGCCCTGGGTGCAGTCGGACAGTGACATCACCGTCCTGCGCCACCTGGAGAAGCTGGGCTGCCGACTGGTCAACCGCCCCCAGGCCATCCTCAACTgggGCCACGAGAACTTCCGCAAGATGATCGATGAGGCTGAGCCACTGGGATACCCTGTGGTGGTCAAGAACGCTCGTGGACACAGAGGGAAGGCCGTGTTCCTGGCGCGGGACAAGCACCACCTCTCGGACCTGTGCCACCTGATCCGCCACGACGCACCCTACCTCTTCCAGGAGTACGTGAAGGAGTCCCACGGCAAGGACGTGCGCGTGGTGGTGGTGGGCGGCCGTGTCATCGGCTCCATGCTGCGCTGCTCCACTGACGGCCGCATGCAGAGCAACTGCTCGCTAGGTGGCGTGGGGATGATGTGCCCTCTGAGCGAACAGGGCAAGCAGCTGGCGGTGCAGGTGTCCAACATCCTGGGCATGGACGTGTGCGGCATCGACCTGCTGCAGCTGGGGGACGGCTCCTTCCTGGTGTGCGAGGCCAACGCCAACGTGGGCTTCATCGCCTTCGACCAGGCCTGCGGGATGGACGTGGCGGGCACGGTGGCCGACTACGCCCTCTCGCTGCTGCCCAGCCGCCTCACCCGCAAGATGTCCCTGCTGTCGGTGGTGTCCAGCGCCAGTGAGACCAGCAGCGAGCCCGAGGTGTGCCCGCCCCCCAGCACCCTCCCCGAGGCGGTCTGCACCATGAGCGTGGGCTCCACCTCCAGCGAGAGCGACCCCGAGCTGGCCGAGCCGCGCGATGCCACGGCCAGCGCCCACCCCGCCCTCCCGGAGCCCGCCTTCAACATCAACACCCTCCTGGCCAACGAGATCAAACTATTGACTGAGTGAGCTGGGCACTGCCCGCACACCGCATCCAGACACGCTCACCCACATCCACGCATATTCAGATGGGCgccggcacacacacacaaacacacagacacacacacacacagccaccgAACACACGGATACACACCCAGACACGTGAATATACAAATGCCGACAAACGCATGCGCCTTCACATGAAACCGAAccaccctcccccacccccacacacacacacacacacactcatcccCAGGACTGACAGGCTGCTCCCATGgttcccccccgccccccagtTTAAAAGGTCTTGGAGTTTTCTGCAGCATGGTGGCGGGACTTGTCTAGgtgatgtttttaattgcatgctAACAGGGCGATCGTTCAAGCGCACAGGACAGTTTGGGAGAGCGTGCCGGCCCTGGCGCGAACTCACCAGCTTTTTAAGATGGATTTTAAACGGCTTTTACACCAGTTGAATACACCTTTCACCCGGAGAGACGGCTCTACTAACAGATTCATGACCAAGCCAGCCAATCTTAAGTATACACTACAGAAGTTACACgagtataaatatgtatgtttctgGCACATAGCAATGCTTGATTTATGTGAAATGAAGTGCTTGCATttcttttgccatttttgtagaaagaacagaacagaaaaaagggAAGGGAGAGGCGGGAAATTAACTTGAACGAAATCCAACCATTTACCCAGGCGGCAGTGACTGACAGCTCTCAGTGTCTGCGTTTTGAGCTGGCTGTCGGGGGGGGGGTTGCGAGGCGCAGGGTCCTGCTGCTGCGTCCTCTCGTTGCGGTTTGGCCACAGGTCCGATACCGCTGCCAACAGGGAAACGGGCCAGAGCGGCTGAACTACAGACGGAACCGCATACCAGCTCAGACGCAGAGCATGAGTTCACAACTGAAAGAAATCGCTCTCATATTAAGAGTCTTCTAAGCAATTCCATGtataagatgtttttttgttgttgtttttttattcatattttgccctaatattaaaaacaataagtgACAAAAGTATTTTCATCATGTGCTAAGTTTACAAACAGGTTGTTTTGATCTCCATGGGTGAGCCAGTGAACATCTCAGAGATCCTCGAGTCTCGTTTTTAAGTTATACACTCTAAGGAAAGTAAATACACGAATGAAACCTGGACTTGACTCtttttgtgtgagtgagtgcacAGGCCTGATGacgcggggggtggggggggaggtcCTCACTCCCGTCGGTGCTGCAGTGACTTGCACGGGTGTGGATAGGCTGCAGATGCAATCATCAGCCTGCATGTGGTTTGATGTGCGTTGGTGGGAGTGGAGATTTATATACCATACAGTCTCGCATGCCAACTTAACAAGAGCAAAACAATGGAATGACTCGTGACTAACAGGGGGGTGCCGATACTTAAACCATGtacttgcaaagaaaaaaaaatactaaaccGGGTAGGCAGATTTGAAGATCTACATCCTTGGGCTCCTGTGTAAAAACATATCGGCTCCGTCCCCCTCTGGGACACCCTGTTCAAGTCGCCCTGTTCGTCCCGCGGGACTGGAAACCTCCAGTCTCAAACAAATGCTCCGAAATAGCTTGCAATCACTGAGCCACAGTCCAGCAGGTGTGATTGGTCACCTGTTATCATCCACTAACGTTACAAACAGGGCCTTTTATATCAATTCCAGCAGCCGCATGCGTTTACCCTGCAGTGGCCATCTCTGACCAGTCCCGGAGGCCTTGACATGGGGTTGTTTACGTTTATTCCCAGTGACTTCTCTCCCCgagcactacacacacagctgaACTGCTCTAGTCATCCCTGCGTGGTGCTCCTAGTCATCAAGAAGTGAGGCGACTCCAGATCTGTGCAGGGGGCGTCCGTGGCTTTTAAACCGGACTCCACAGGGCAGCCTCACTGAAACCGCCTAGGTACCAGAACGCACTTTGTGCTACTTTTTAACCTAAAGCTCCCTGGGAAGCAGCCTGGATCTCAGTCCTCCTCCATCAAGGCATGTGTGACACATCCATTCGTAGCTAGACATCTgcctaaaatatgtattgacaaacaaacagacgACTTTTTAAACTATGAAAAGACGCGGTGTGCCATCGCAGGTCCACACGCGCTCTTCTTCGCTTGTTTTATAATGttccgtgtttttttttttaaatttaatttattgtacttttttgtttttttaaggaaacaaaTATGGTTTGTGTGCACTAATCTGTCTCAATAAAGTGAGACCGCTGTGAAGTTTGGATTTTGTGGGACGTTTTACTAACAACCTGGCATCCAACAAGACTCGACACTCGGCAGTAATCACTGTACGTACACCACTGGCTCTCGACCTGGTCACTGTGAATCCAGGGATTTGATAGGATACCAGGGCGGTGCTGGGTACctatgacctttgaccttcgTCATCCACATCTACCTGCTCTCAGACTTGTAGCGCGTTTCATATCTCGTTACAGTTCGTGTGATCGGCTCGTTTACCTGGCCACTCATTCCGGGGAGGGGAaataaaggggggaaaaaactgttCCTGGACAGCCATTTCTGGAGGATGTGTAAAGCCCatcctaataataattaaactataaaACCAGACACATTAGTGGTTTACTCACCTTACCAGTTTACTGATTGCTCTGCAATGTTCAACACAGCTCCCAATCCAAGAAGAGCACCCACAGATGATCAGACAAACACTGCAACAGAGTTAAAGCCCAGTGCAGACCCCTGACAGCTATAAAAGACCCTTAAACCCACCATAAGTCATCTCCAGCACCAAACTCCATTGTGGTCCATGAGAATTTGTATCAGGCAATCACGCGGACGATTAGCCCATGTTCTCCACAGCGCTGTCATGTGTGTGTCACACTAATGACATGGCAGGAAACCAAAACTAATCTCCGAGTGATTTGCTGGGCTGCAGACTGGAAAGCTCGACAGATAGCTGTACCTCACCCCCAGCCGGAAATTAAAAGGAATTTGTAACGAGGAATTTGGCAGCAACGTCTCATAGTCTGGAAGTCGTTTCTTCCAGCACCTCTGAGCTTCGGTGAAACTGTTCTTGATCTCGGAAATGCCAAAAAGATTTCTATTGCTTAGTAGCACAAGTGTGCATTTACAGTATGAAGAAGGAATATCATTTTGTACAGTATTGGGTTATTtaagtgcatttgtttttctttactgtcAGTAGCTTTGTTACATTTTCAGCCAGTTTCAATTTGACCTACTTTAGAGGGACTATAAAATTAACCATATCAGTGACACCCGTCTTCTGACACCATACAACGCAGGGAGATTGAGGccgatttaaaaatgttacctCCTCCGCAGGCACTTGTTATCACGAACCTCACACGACTGAGCTGGTGTGTAATCTCTCCAGCTTCAGTGAACGTGACCAGTCCGACCCCAGCGTTCGTGTTTCCCTTCACATCCGCCGACATTCATTTCTGATGGGAATATTCACGAACAGATGGCTCTGGGGTCTAGTTTCCTCCTCATCTGAATGTGGGGTCGTATTTGTGCCTAAGCCTCTTTAAAAGGTGTCTCAGTGACTCTTTAAAACAAAGTTCTTTCACCCCGGATCGAGTCACAGTGTTTGAGGCGCAGCCCACACTTTGACAGAGCCACACTACAGTATTAACAAACACTACCGACAGCTGCTCCCCCGCGGGCTGAGAGAATTAACCCGACCCCGTCTCACACGCGCTCTCATCTCCTCACGCCTTGTCATGCCTCTGTCAGCCACTGCCATTGTCACGAGAGACTGTCGAAAGAGTCTGGGAGAGATCCGGCGTACGAGTCCCTCTGGCTCGCAGCCCTCACAGAATGGTGCGCACATCCCGTAGCGTCGGACCAGACGACGGAAAGCCCGTAGGAGGCCCCTCTCGTCCCGTTGGCTCTCGGTGGGATAGGGAGCTGGGGGCCAAGCGGCCGCCTCTGGCCTTCAGGGGTCTCGGTCGACTCATGTGTAAAGCAGATTTACTCAAAGTGTTTTCAATGCAATGTAAACGGTGCACTGATAGTATGACGACTCTCAGATCCCATATCTGgtgttatttttactttattattattattattatttttatttccctcgTGCTGAAtgatgcaaatatttttttttattttttttttctagatgAAATAAAATGGGTCATTATAACAAAAAATCAGATCaa

Function

symbol description
rimkla Predicted to enable N-acetyl-L-aspartate-L-glutamate ligase activity and citrate-L-glutamate ligase activity. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cytoplasm. Orthologous to several human genes including RIMKLB (ribosomal modification protein rimK like family member B).

NR:

description
PREDICTED: beta-citrylglutamate synthase B

GO: NA

KEGG:

id description
K18311 RIMKLA, NAAGS-II; N-acetylaspartylglutamate/N-acetylaspartylglutamylglutamate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002074 True 5144 mRNA 0.51 4 2831684 2841963

Neighbor

gene id symbol gene type direction distance location
AMCG00002075 NA coding upstream 14712 2816757 ~ 2816972 (+)
AMCG00002060 NA coding upstream 580545 2248017 ~ 2251139 (+)
AMCG00002059 NA coding upstream 610900 2216551 ~ 2220784 (+)
AMCG00002054 NA coding upstream 749396 2081233 ~ 2082288 (+)
AMCG00002051 NA coding upstream 754747 2054731 ~ 2076937 (+)
AMCG00002073 ppcs coding downstream 15704 2857667 ~ 2861786 (+)
AMCG00002080 NA coding downstream 64902 2906865 ~ 2910535 (+)
AMCG00002081 LOC106572212 coding downstream 105503 2947466 ~ 2952329 (+)
AMCG00002082 NA coding downstream 125402 2967365 ~ 2986779 (+)
AMCG00002088 ybx1,LOC100194660,LOC107733967 coding downstream 153415 2995378 ~ 3004718 (+)
G120674 NA non-coding upstream 135277 2696064 ~ 2696407 (+)
G120602 NA non-coding upstream 605704 2225780 ~ 2225980 (+)
G120566 NA non-coding upstream 628313 2202617 ~ 2203371 (+)
G120565 NA non-coding upstream 646704 2184780 ~ 2184980 (+)
G120564 NA non-coding upstream 655242 2174587 ~ 2176442 (+)
G120692 utp3,LOC102785935 non-coding downstream 19952 2861915 ~ 2866024 (+)
G120755 NA non-coding downstream 198604 3040567 ~ 3042435 (+)
G120763 NA non-coding downstream 201677 3043640 ~ 3046804 (+)
G120774 NA non-coding downstream 249831 3091794 ~ 3092899 (+)
G120778 NA non-coding downstream 257644 3099607 ~ 3100142 (+)
G120518 NA other upstream 890868 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 1838920 682670 ~ 992764 (+)
AMCG00002076 NA other downstream 10191 2852154 ~ 2854127 (+)
G120742 NA other downstream 114945 2956908 ~ 2959475 (+)
AMCG00002098 NA other downstream 691851 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 2376867 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 3744691 6586654 ~ 6602608 (+)

Expression


Co-expression Network