AMCG00002077 (utp3,LOC102785935)


Basic Information

Item Value
gene id AMCG00002077
gene name utp3,LOC102785935
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2861912 ~ 2872273 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002077
ATGGTGCGGGCACTGAGAGCGGTGCGTCAGAAGAGGACGAGAAAGGAAGAGCAATATGACAGCGATGACCCTGCAGCTTACAGGGACATGTCTGTCCCGGACAAGAAATCCTCCAGTTATTTCCAGGATGAGGTGGATGAGTTTCACGAGGAAAAGATCAAGAAGCTGCTGGCTCGAGGGGTGGGAGTGGACAGCGATCCGGAGGACGTCGCAGACGAGGTAAGGGGAACGACGGCACATCCCTACAGCGGTACTGTAGCTGACCTGGAGGAGGTGATGGGCCTGGAGCTGTCCGAGTccgaggaggaagaggaggaggagactgACATGGACAGCGACCTAGAAGGGAAGAAAGATGATGACCTGCCCAACGAAATGGCCTGGGGCCTCAGGAAGAAGATGTTCTACGACTCGGACTACGTATCTACCAAGGGGAAGTCTAAAGAGGAGGCCGACgcggaggaagaggaggaggagcaggaggccaAAAACATCCAGAACCGGCTAGTGGGGACCCTGAGTGAGGAGGACTACGACTTGCACCTCCTGCAGGCCTTCGCCGCGGAGTCGGAGGAGCACAAGGCCCCGGAGAAGGAGCAGAAGATCGTGAAGGACCTGCAGAAGATGTCCCAGAAGGAGAAGTTGAAGCTGCTGAAGAAGGAGTCCCCGGAGCTGCTGGAACTCGCACAGGACTTCAAGGCCAAGGTCCGAGCCCGGGTATCACCGGGGTCTCGCCGCCGTGGCACTCGGGGTGGCTTCGGGGCTGGGGGGTCGGGGCTGATGGAGTTGAAGGACGAGGTGCAGCCCCTCCTGGACATGGTGAAGGACGGCAGGATCCCCAAAGGCAAGGGAGCCGACTACCTCCGAACCAAACGGCAGCTCTACCTGAAgaaggAGGCAGGGGGCAAAACGGCCACCAGCAGAAAGGCGGCTGAGCGCGCGGGTCTCCAGCCTGCTGCCGACTCCGACTCCGACATGGACGAGGAGGCCGCGCTTCGCTTCTACAAAGACATGGAGGAGAGGCTGAAactgaagaggaagaagaaCAGCCAAGAAACTGAGGAAGGATTGGCGGAAGGAGAAGAGGTGGAGCTCGACCCAGATGCAAAGAGAGGCATCACGTACCAGATGGCCAAGAACAAAGGTCTCACACCCAAGAGAAAGAAGATTGACAGGAACCCCAGAGTCAAGCACAGGGAGAAGTTCAGGAGAGCCAAGATCCGCAGAAAGGGCCAGGTCCGCGAGGTCCGCAGGGAGGAGCACCGGTACGGGGGAGAGCTGTCTGGCATCCGCGCCGGAGTCAAGAAGAGTATTAAGCTCAAGTAACTGAGGCCTGGCTTCTCCCAGTCCTCTTGTCAGTGGCTACAGAGGGTCCGGGGTGGGCAAGCAGGGAGAATCACGCGGCAGAGCAATGACCAGAGGAGCCCTTCAGGTTTCAGCCACGGGGTCAGCAGGGCTGTTTAGGGAACATTAAGGGTCTCCAAATTATAAAGAGCTGTTGCTGCACGGTCCCTGACAGCAGTGGCTCAGTTCGGCTTAAGTGCAATCTGTATcttttaaataacatgaatCGGACTTTGATTCTGTTTGTAATCTCAGTGGTGCAGAAATCACTGGGTATCacctttcaaataaaaacatctatttCCAGTA

Function

symbol description
utp3 Enables enzyme inhibitor activity. Acts upstream of or within with a positive effect on cellular protein-containing complex localization; digestive system development; and protein localization to nucleolus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including brain; digestive system; and endoderm. Orthologous to human UTP3 (UTP3 small subunit processome component).

NR:

description
PREDICTED: something about silencing protein 10-like

GO: NA

KEGG:

id description
K14767 UTP3, SAS10; U3 small nucleolar RNA-associated protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002077 True 1653 mRNA 0.57 15 2861912 2872273

Neighbor

gene id symbol gene type direction distance location
AMCG00002079 NA coding downstream 4785 2856058 ~ 2857127 (-)
AMCG00002072 foxj3,LOC103362994,LOC101077580 coding downstream 134644 2701238 ~ 2727268 (-)
AMCG00002069 NA coding downstream 172325 2682702 ~ 2689587 (-)
AMCG00002071 NA coding downstream 181424 2678384 ~ 2680488 (-)
AMCG00002070 NA coding downstream 199111 2653818 ~ 2662801 (-)
AMCG00002084 NA coding upstream 63248 2935521 ~ 2946153 (-)
AMCG00002083 NA coding upstream 84608 2956881 ~ 2961258 (-)
AMCG00002089 NA coding upstream 171375 3043648 ~ 3066913 (-)
AMCG00002090 NA coding upstream 215271 3087544 ~ 3089884 (-)
AMCG00002092 NA coding upstream 223447 3095720 ~ 3110908 (-)
G120683 NA non-coding downstream 165525 2695581 ~ 2696387 (-)
G120601 NA non-coding downstream 637507 2223343 ~ 2224405 (-)
G120589 NA non-coding downstream 699056 2162641 ~ 2162856 (-)
G120574 NA non-coding downstream 865845 1995768 ~ 1996067 (-)
G120573 NA non-coding downstream 867889 1993728 ~ 1994023 (-)
G120743 NA non-coding upstream 81000 2953273 ~ 2953482 (-)
G120746 NA non-coding upstream 113300 2985573 ~ 2986779 (-)
G120754 NA non-coding upstream 136628 3008901 ~ 3020156 (-)
G120760 NA non-coding upstream 168275 3040548 ~ 3042500 (-)
G120789 NA non-coding upstream 219503 3091776 ~ 3092899 (-)
AMCG00002078 NA other downstream 13975 2845382 ~ 2847937 (-)
AMCG00002044 NA other downstream 1371345 1486551 ~ 1490567 (-)
AMCG00002085 NA other upstream 48979 2921252 ~ 2931018 (-)
G120748 NA other upstream 123235 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 241169 3113442 ~ 3128440 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other upstream 301232 3173505 ~ 3186353 (-)
AMCG00002097 NA other upstream 535212 3407485 ~ 3466461 (-)

Expression


Co-expression Network