AMCG00002078


Basic Information

Item Value
gene id AMCG00002078
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2845382 ~ 2847937 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002078
ATGGGAGATCCCAGTGAGATGGCGGCACACTTGATGCTCTTCGCTCTGGGTGGTGGCACAGTGCCAGCACTGACGTGTCATCTTCTTCATTTGGGGTTGAAGACACAGGCAATCCCAACCAAATTGTCCCACTGGCCTCCCGCTGCACGAGGGATGATTACGCCAAATGAGTCCCAGGCAGCAGAAGCCCATCAGGTCCTGAGTGCCATCCTGGCCGTCCGGGAGCGGGCCTCCCACCCGGAGCCGGCCGACATCGCCCGCACCGCCCACGCCCTGGCCCTGCTGCACTCCCTAGACGCGGACGCCGGGAAGGTAGGGGGCGCCGTGGGGACGATCACGCACTCCTCGGCGCGAGCCAAACCCCCAGATGAGCTGCTGTTGGTCACGGTTATGACCCGTCACCAGGCGAGTCCAGCGTCGTATGGAGCCGGAGTCTCAGTTCACAGCGATAGTTCTGTTATGGAAAAATCGAGTGCCAGGGAAGAGAGAATAATGCCACGTGTGACGTCTGGTTTTACTCCATGCCAGGCGGTGATGTATGGCAGAAAAGCCCTGCTGTCCAGCCAGCTGGTGCCGGACTGCGGCCTGACGCAGCCCATCGAGAGGCTTCTACAGCTGGCCGAGCCCAACGCGGTGTGA
>TU151243
attgctgctgTCTGCAATCGTCGTGACTCGTGAAGAAGTAGGGCGTGAAAAGCCCTCCTGCtgacgctgtgtgtgtgtatgtgtgcacgCAGGTAACACGGATCTGGCACAGTCATCTGACCTGGCTGTTTGATGAGCGTGCGGAGATCTCCAGTGTGTCGGCAAGCCCTGCAGCACCGGTGCCGTCTCTCGATGAGTCCCAGGCAGCAGAAGCCCATCAGGTCCTGAGTGCCATCCTGGCCGTCCGGGAGCGGGCCTCCCACCCGGAGCCGGCCGACATCGCCCGCACCGCCCACGCCCTGGCCCTGCTGCACTCCCTAGACGCGGACGCCGGGAAGGCGGTGATGTATGGCAGAAAAGCCCTGCTGTCCAGCCAGCTGGTGCCGGACTGCGGCCTGACGCAGCCCATCGAGAGGCTTCTACAGCTGGCCGAGCCCAACGCGGTGTGAGGGGTTTCGATGCGGTGTACCGCCACCTCCCCCTGGCGCCTGCTCTACCTGAACATCGCCAGAGACCacccgtctctctctgtctctgtctgatGGGTCCATGTGTCAGAGATGCAGCAGCTCTTTATAGTGAGTGAGTTATAGTGACTGACTCGGAGCACGATGCACTCATTCTGTTCTCCCACTGGAATTGTTGTTATTGTACACTATTCAATAAACGCCTTTATCTCCGTTTCCCAAA

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002078 False 639 mRNA 0.62 4 2845623 2847428
TU151243 True 690 lncRNA 0.59 3 2845382 2847937

Neighbor

gene id symbol gene type direction distance location
AMCG00002072 foxj3,LOC103362994,LOC101077580 coding downstream 118114 2701238 ~ 2727268 (-)
AMCG00002069 NA coding downstream 155795 2682702 ~ 2689587 (-)
AMCG00002071 NA coding downstream 164894 2678384 ~ 2680488 (-)
AMCG00002070 NA coding downstream 182581 2653818 ~ 2662801 (-)
AMCG00002068 NA coding downstream 199968 2635269 ~ 2645414 (-)
AMCG00002079 NA coding upstream 8121 2856058 ~ 2857127 (-)
AMCG00002077 utp3,LOC102785935 coding upstream 13975 2861912 ~ 2872273 (-)
AMCG00002084 NA coding upstream 87584 2935521 ~ 2946153 (-)
AMCG00002083 NA coding upstream 108944 2956881 ~ 2961258 (-)
AMCG00002089 NA coding upstream 195711 3043648 ~ 3066913 (-)
G120683 NA non-coding downstream 148995 2695581 ~ 2696387 (-)
G120601 NA non-coding downstream 620977 2223343 ~ 2224405 (-)
G120589 NA non-coding downstream 682526 2162641 ~ 2162856 (-)
G120574 NA non-coding downstream 849315 1995768 ~ 1996067 (-)
G120573 NA non-coding downstream 851359 1993728 ~ 1994023 (-)
G120743 NA non-coding upstream 105336 2953273 ~ 2953482 (-)
G120746 NA non-coding upstream 137636 2985573 ~ 2986779 (-)
G120754 NA non-coding upstream 160964 3008901 ~ 3020156 (-)
G120760 NA non-coding upstream 192611 3040548 ~ 3042500 (-)
G120789 NA non-coding upstream 243839 3091776 ~ 3092899 (-)
AMCG00002044 NA other downstream 1354815 1486551 ~ 1490567 (-)
AMCG00002085 NA other upstream 73315 2921252 ~ 2931018 (-)
G120748 NA other upstream 147571 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 265505 3113442 ~ 3128440 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other upstream 325568 3173505 ~ 3186353 (-)
AMCG00002097 NA other upstream 559548 3407485 ~ 3466461 (-)

Expression


Co-expression Network