AMCG00002083


Basic Information

Item Value
gene id AMCG00002083
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2956881 ~ 2961258 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002083
ATGGCAGGGCGGAGGGTGTGTCTGAGCTCCGCTCCTGGGAGCTCCCCAGGCAAGAAAAGAGCAGGCGAATATCAGTCCAGTCCGCACAGCCACACTTCAGAAATCAGgGCTGCCACGGGGGGCAAAGACACTGACAGGATGTGTGTGAATGGCGAGCACACGTGGCAGATGATGGCAATCCTGAAGACGGAGATCGGCCAGCGCATGGTGGAGGACAACACGCTGCAGTTCCTGGGCGTCCTGCTGTTCAAGGTGCTGCTCAACTGCCTGCTGTTTGCGTCCAACTTCCGCCGGGCCAGCAGCTGCTTCCTGGGCTTCTTCTGCGTCTCGCTCTTCCTGGCCGACTTGGCCATGGTATGCGGTGTGTTGGCAGTGCAGTTCAGCAGGGACAGCGAACTGTACCTGCCCGAGCTCATGTGCTCCATCCTGGCCCACAGCTCCACCATGTACCAGCAGCTGCCCCTGCCAGTGCTGCTCCTGGGGCTGCTGGACTACACCATCAACATGCACCGCCACTTCCACCCCCTGACCCCCTGCCGGGCGGGGCTGTACTGCACGCAGGTGCTGCTGGTGTGGGCCTATGCCAGCTGGTTCTCCTACAACCACAGCATCTCCATCCTCCTGGAGGGAAGCCTTGCGGACGGCCGCACAGCCATCTTCTGCCCCGTGCTGGACTGCAAGGCGGCGCTCTACTGCTGCCTGGCTGCAGCTCTGGCCGCTGGcgctgtgctgctgtttttctgGAGGGAGCTGCCGCTGCTGTGCCGCGTGATGCACCGGCTGGGGCTGTTCCACGAGGAGCTGGAGAACTTGGTCCACAGCAAGCCGCCCCACCGCTACAGCCAGCTGCCCGAGGAGGGGCACGGGGAGTTGGGAAAGTGCGCCGAGCAGGTGGGACAGTGGCAGAGGCCTCCACTCCTCCTCAGCATCACCATGGGCTACACACTCAGCTGGATGGCCTTCCTGCTGATCAACATCATGTGTGTGCTCGTGGACTTCGCCGTGCCCTCCTACATCAGCGTCAACATCCTGTGGACGATGTGCTTCAACAGCCTGCTGACCGGCCTGACCTTCTGGGCCCGCAGCCAGCGGACGATCTCCAGCACCGACCTCCCCGAGGATATCTGCAACTGGACTTTCTACTGGCACATGAGCCGGAAGACCAGCCCCACGTCCCTGGAGCAGATCTCCACGGGCATCTACACGCTGTCCGACAAGACGCACAAGAACCCCTCACTGGTGTGACCCAATGGGTCCGCTGTGCACATGACAGTTAGAAAGTGTTGAAATGATCCGTGCCTGGCTGACTCTTTGACACGCATCAGGGCGAGCCAGCTTGACGCGAGTGTCAGGCGTCACTCAGGAACGGAGGTCTACGAGGTCCCATCTGCACTCAAGGCATGCCCTTCCGCCCAGAGAAACTCTCAGCCACCCTGACTGCCTGAATGGAGTTGATTGActaactgcatttttaaactcGTGGGATATGGTCACTAGATCATCTGCGGTTCTAAACAATGCACATTCCACCCCATTGGGAGAAGCCAGGTGTTTACAGTTTTGCCTTGTTATGGTACAggaccaaaaagaaaaacacaaacaccaccacAAAAAAATTCTTAAGATCATTCTGTCCAgcaaaaaatgataaaaatgcatttatctcaaagagagagactgatgAACTTTGGGCCTGTGCAACTGGAAATGAAACATCACTGTCCCTTTAAGAGAGGATTCCTTCTGCTCTCATAATGAGAGGAAGATCACACTTGGTTACAGACATGTTTGTAGCAGATTCCTCAAATGACACTAAAACCACCCTGGGTGTGTTACTTCATGGCACACATTTAGAGAACTAAAGAGAGAACAGTGTCCTGCTTATCTGGTCCACCTTCTGTGTAAAGCTGTGTACATATTTTCACAATCCTACGGCTGTTTGTGCTCAGGAGGGGAAGTCGCTCACAGCCCCAGGACGCTGTGCCTGACTGGCCCTTAAGGGTGGCCTGAGCGATTTTCACTGTAGGAGCTTTCAGGttattttgaatgttcacaCAAACCAGCAAATGGCACAGGGTCAGCTGACCTAATAAGCAGACAACACTTGAAACAGTACACATAGACAAAAAAGGATGTGACAAAGAGCCAAgagttttacagttttgttttgttcttttactAAGGAATGTGGGTATTTTCCCTCATACTCTCTCCATAGTTGCTGTTAATACATAATCAATCACTCAAGCTGTGCATTACATTGTGATAAAGGGTCTGGGggcataattttgttttctgtgctctTCTGCGGTGCTTCTTACGAAGGTGAAAGAGTTCTTTAGCAGTAGCATTGTCTGGGTGCTCATACAGGACAAGGtttacacacactgtctcaGGAGAGGCCTGTCTGTGGAGGTATAGTTGTGCTATACTTCCTTAATAAAAACTCAAAGTACCGACCAGAGTCCACTTGTCCTTTGATCACTGTTTGTACTTCCAGATTGCACCGTGATTGTCGCTGTGAACAACCATGTGATGCATGAACCACTGCCTGAAGCTTTGTCCTTGATTGCTTGACTTACTGTTTACAGGTTTTGATCCTTCTCCCGCTATTGAGTGTACATAGgtttttggttagttttgttgTAAAAGACAGGGGCCACTTGACACACAAGACCATCTCCAGGGTATCTCTTACAGCTTGaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002083 True 2707 mRNA 0.53 3 2956881 2961258

Neighbor

gene id symbol gene type direction distance location
AMCG00002084 NA coding downstream 10728 2935521 ~ 2946153 (-)
AMCG00002077 utp3,LOC102785935 coding downstream 84608 2861912 ~ 2872273 (-)
AMCG00002079 NA coding downstream 99754 2856058 ~ 2857127 (-)
AMCG00002072 foxj3,LOC103362994,LOC101077580 coding downstream 229613 2701238 ~ 2727268 (-)
AMCG00002069 NA coding downstream 267294 2682702 ~ 2689587 (-)
AMCG00002089 NA coding upstream 82390 3043648 ~ 3066913 (-)
AMCG00002090 NA coding upstream 126286 3087544 ~ 3089884 (-)
AMCG00002092 NA coding upstream 134462 3095720 ~ 3110908 (-)
AMCG00002093 LOC106567259 coding upstream 172850 3134108 ~ 3146480 (-)
AMCG00002095 NA coding upstream 185346 3146604 ~ 3147047 (-)
G120743 NA non-coding downstream 3399 2953273 ~ 2953482 (-)
G120683 NA non-coding downstream 260494 2695581 ~ 2696387 (-)
G120601 NA non-coding downstream 732476 2223343 ~ 2224405 (-)
G120589 NA non-coding downstream 794025 2162641 ~ 2162856 (-)
G120574 NA non-coding downstream 960814 1995768 ~ 1996067 (-)
G120746 NA non-coding upstream 24315 2985573 ~ 2986779 (-)
G120754 NA non-coding upstream 47643 3008901 ~ 3020156 (-)
G120760 NA non-coding upstream 79290 3040548 ~ 3042500 (-)
G120789 NA non-coding upstream 130518 3091776 ~ 3092899 (-)
G120841 NA non-coding upstream 531698 3492956 ~ 3494050 (-)
AMCG00002085 NA other downstream 25863 2921252 ~ 2931018 (-)
AMCG00002078 NA other downstream 108944 2845382 ~ 2847937 (-)
AMCG00002044 NA other downstream 1466314 1486551 ~ 1490567 (-)
G120748 NA other upstream 34250 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 152184 3113442 ~ 3128440 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other upstream 212247 3173505 ~ 3186353 (-)
AMCG00002097 NA other upstream 446227 3407485 ~ 3466461 (-)
G120907 NA other upstream 752609 3713867 ~ 3716252 (-)

Expression


Co-expression Network