AMCG00002084


Basic Information

Item Value
gene id AMCG00002084
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2935521 ~ 2946153 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002084
ATGAAAGACTGGGTTCAAGCGACTCCCAATCTGGGACATATGCTGCAGGAATACAGCTGTACAACAGATGTTGGAGCTAAGATGGGCACTTCGTTATGGCTGAGGAATGTGGAAACAGGAACCCTGCGTGGTCTCATTGGCTCTGACTGGGAAAGACCTGTTGTCCTGATGGCGTTTCTTCTGATCTCTGTGACTCTGCTGCACCTCGTCAGCCTGACCATGCTCTTCATAGCAACAATGGAGAAGtCCTGGTGGGTGTGGAGAGACGTGGAGAACTCTGACCTGTGGTTCAACTGTCTGTTTGACAACAGCACAGGGAGCTGGATATGTGCCACTGCAAAAGAGAACGAGTGGCTCCAGGCTGTCCAGGCACTGATGGTCCTCTCGGTCGTCTTCTCCTCCCTGTCCTTCCTGATCTTCCTGGGGCAGCTCTTCACACTTTCTAAAGGAGGTCTCTTCTACATCACCGGGTTTTGCCAGGTGTTCGCAGgtgTCACGGTCTTCACCGCAGCCCTGATCTATTCCGTACACCACGGAGGCATACTGCAGGacgagaaggcacccatcagtGGACATTTTGGCTATTGCTTCATCCTGGCCTGGGTTTGTGTCCCTCTGCTGCTGGCCAGTGGAGTGATGTACATCCATCTGCGAAAGAAAGAGTGACCCACGGACACGAGAAGAAGGAACGGAGCTTTGAGGGAACATTGTacagtttctttttaatgagGGGCAGTATAGTAAAAGGGCcctgcttttgtattttgtattgcttttccattgatgtttatttatcaGTAAAGTGCTGTATAGCGGTGCTCCAGGGTCAGTTATCCTGCCACGTATGCTACAGTCTGTGAATCCCACCGAACACGGCTGGGACACCTCCTGCAGTGACCCAAAAAGGCAGGGAAGGCTAAGAGCTAGAGGGTGTGATTGGCTTTTTGACTTTCTTTCATGACATGTGCAGATAGTTGGGCACAGAGTTGGGTAGAGTTCGGTATGTAAGGTAAGTCAATGCCAGAGAAAGGTGAGTTTACTCCAAAGACCTAAACCTGTACCCATACCTTTACCAGCTTTTGAGATCCATCTCATCTTAGGAGGATAATACCTGGAGACCCCAGGCCATATTCTCACAGTGTATTGTGTCTGGCTCAGGTTTCCACACTCCTTTAGAGAAACACACACCATGGAGATCCTTAAATGGGTTTTGGCGGGGGTCTCCAGCTCCTAAGTGGACTAGATGTGTATATGGGAGGAGTAGGTTAGAAGTCACAAGTTTTTTACCATTTATCACAAAACCAGACACTTTGTAAAGGGGGTATTGTCTTCATTAGTCAAGAATAAGATGATTAATTTTACCAGCCCAATAAAGATACTCATTAGACCTTTAAACAGGCTTAATGGGCCCCTTTAATTATAGCCCGGGaagtatttgtcttttttatgaATTCATTGGTGGAGTTTATTTCTGATGTTATTGGCTCTTGTGACATGTGGGTCACAAACTCCTCCCTGGTTTTGCATGATGTTTAGAACAGTTCATTCCCGGCTAAATAAGCGCAGCCCATTTAACGCCACAAAGGAGACGGGTAATGTTGGCTTTGGCTCGAGCTCAATGTCTGCAGTCTGACTGGAACACACCTGCGCTCTCCATCTTGTACATTATAGCATGAtggtaaatagtttatgaaCTGCTACACAAGCTTAATTGTTTCCACAcgttttgtaaaacaaaaaatgcaggtAACACTTTTGTATTGTGGTGTCATGTATGAGTTCttgtaaattgttttttctAAGCAAATATAATTCAGTACAATTATATAGGATTATagatcatttaataaaaatgtaatatattttacaagtgATTTATCATGAAGTCACACCTTCAGATTTGTGTAGAAATGTTTACACAATTAAGAATTGTAAGATGGCCAAGAATTACCATTTGGTTAGTAAAGCATTACATCTGTTACATAATGAACACAGTGTTACATTTCTGTATACAGCGGTCATTTACATTCCCAATACATTGTGAAGTTGTAAACCAAAGGAAACTGTTGTTTGCTGATATACTTAATgcttttcttgtaaaaataaaattatgtagGTTGTGTTGACCATAAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002084 True 2134 mRNA 0.43 7 2935521 2946153

Neighbor

gene id symbol gene type direction distance location
AMCG00002077 utp3,LOC102785935 coding downstream 63248 2861912 ~ 2872273 (-)
AMCG00002079 NA coding downstream 78394 2856058 ~ 2857127 (-)
AMCG00002072 foxj3,LOC103362994,LOC101077580 coding downstream 208253 2701238 ~ 2727268 (-)
AMCG00002069 NA coding downstream 245934 2682702 ~ 2689587 (-)
AMCG00002071 NA coding downstream 255033 2678384 ~ 2680488 (-)
AMCG00002083 NA coding upstream 10728 2956881 ~ 2961258 (-)
AMCG00002089 NA coding upstream 97495 3043648 ~ 3066913 (-)
AMCG00002090 NA coding upstream 141391 3087544 ~ 3089884 (-)
AMCG00002092 NA coding upstream 149567 3095720 ~ 3110908 (-)
AMCG00002093 LOC106567259 coding upstream 187955 3134108 ~ 3146480 (-)
G120683 NA non-coding downstream 239134 2695581 ~ 2696387 (-)
G120601 NA non-coding downstream 711116 2223343 ~ 2224405 (-)
G120589 NA non-coding downstream 772665 2162641 ~ 2162856 (-)
G120574 NA non-coding downstream 939454 1995768 ~ 1996067 (-)
G120573 NA non-coding downstream 941498 1993728 ~ 1994023 (-)
G120743 NA non-coding upstream 7120 2953273 ~ 2953482 (-)
G120746 NA non-coding upstream 39420 2985573 ~ 2986779 (-)
G120754 NA non-coding upstream 62748 3008901 ~ 3020156 (-)
G120760 NA non-coding upstream 94395 3040548 ~ 3042500 (-)
G120789 NA non-coding upstream 145623 3091776 ~ 3092899 (-)
AMCG00002085 NA other downstream 4503 2921252 ~ 2931018 (-)
AMCG00002078 NA other downstream 87584 2845382 ~ 2847937 (-)
AMCG00002044 NA other downstream 1444954 1486551 ~ 1490567 (-)
G120748 NA other upstream 49355 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 167289 3113442 ~ 3128440 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other upstream 227352 3173505 ~ 3186353 (-)
AMCG00002097 NA other upstream 461332 3407485 ~ 3466461 (-)
G120907 NA other upstream 767714 3713867 ~ 3716252 (-)

Expression


Co-expression Network