AMCG00002085


Basic Information

Item Value
gene id AMCG00002085
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2921252 ~ 2931018 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002085
ATGTCGGTGAAGGGCATGTCCAACTCACAAGACCTCAGCCTGAACGATGAGGCGGTGTTCCTGCCCATCTCGGAGTCCAGCCCCGAGTTCTACTACAGCGAGGCCGAGCGCAGGGCACTGGAGTCGCTGCTGAGCGCCGGCCCGGGAGCCTTCCACACCAAACTGAGCCTGGAGAAGCTCAGTCCCTTCCTGTCCCAGGAGGAGGTCTTTCTGATCGACCACTGGGCCCAGGATTTCAAACACAGCGAAGTGCAGCCGGAGAAGCTGGAAGGGCCGGTGACGGAGGGGGGCTCGGTGGTCGGCCGGCCTTTCTCGCTCAGCTATTGGCCCCAGCACTCTGACATCCCCGCCCCCATCCTGGAGCTAGGCTGGCCCGAGAACGGGGACTGGAAGGGGGTCACCCGAGCGATGGTCTACACCAGCCCGCCTACGGAGGGAGCGCCGCCCATCAGAGAGGTGGTGAGGAGGCTGATCCAGGGAGCCAGCAGGTTGATCGCTGTGGTGAccgacagactgacagacagcaTGGTGATCTCCGACCTGCTGAACGCTGCGGCCCGCGGTGTACCTGTCTACATCATCCTGAACCGGAGAGACCTGCTGGAGCACTGCTTCCTCGGCCGACTGAGGCACCAGAATATCAGCGTGCGGGTCCTGGGAGGCAACACGTTCTGCTCGCGGGATGGACAAGTGGTGACCGGCGATATGAAGGACAACTTCCTCCTGGTGGATTTGCAGAAGGTGTTGATGGGAAGTTACAGTCTGACCTGGACAGACGCCCACCTGCACCGGCAGCTGGTGACGGTGCTGAGCGGTCAGGTGGTCGAGGCCTTCGACAGCGAGTTCCGCGTGCTGTACGCCTCGTCGCTTCCCGTGCCCAGCGAGTGGAGGGCCGCAGAACAGCCCGGCCCGCCCGAGGGCTCCTCCCTCTACCCTGAACACTCGGCCAGTGAAAACCCCTCACACTTCACCCCGGACAGTGCCGGTCACTCAGTCACGCCTCCACTCACAGACTCTCCCCTGAACTGGGTGGCGCTCGGTGTGCTGCACTGGAACGAGGGGGAGGGTCTCACGGACAACCCAATCAACCAGCCGGACCACAGCCGGGAGCGGGAGCGGCCGGGGCCACATCCGAACGCCCATCCCACTTTCGAGAGGCGGGCCCCAGTGGGGGAGGAGCTTTCACCATCAGAGCCGAATCTAAACAACCCACATCTCCGCTCTCcgacagaaacacacaacaagAACAGCAATCCTTCAGGATTCAGGGACACGCCAAGGGCTGAGGGGCCGAGGAGTAATAACAACCCTGCGCAAAGGGCCGGCGCTCTCGGAGACGGGCAAAGTGCGGAGCTGACCCACCACCACAAACCCAACGCCTGGAAGAAGGAGTTTACACCCTGGTACTCCAATCACAAACAGGAGGAAGTCCAGGGCCAGAGGCGCTACATTTCCACGCTCCACAGAGACCCGGTACCGGCAGCGTGGCCGAGCACCGGACTGAGACAACTGCAGTCGAGCCTCGAACCCGACACATCGGCAGCAAAGGCAGGCCTGGCTTATGGATTTTTTTCACGCCCCTATCAGAAAGTCCCACGTGACATCCTGAAGGGGGTGCTGTCTCGCCGCAGCTCGACTGTCGCGCCCCGCCTTACGAATACCAGCAAGTCCATGTGGGACCTGAGCCTGTTCTCCACGCAGACGGACTCCATCGAGGACGGCTCCGAGAGGCAGGCGTCTCCTCGCATCTCACAAGCCCAGTGCCCCTGTCTCCTGCAGGACAAAGACCCTTACAGCCTGAAGGTGACGCCCGCAGTGGCCCTAATGAGGCACCGAGGGGACGAGTCCAAACCCGCCATTTCCAACCCCTCACCCCGCGAATCCTTCCTGCCCACCCTGAGACAGAAGAGGAGGAGCTTCAACTTCCTGAAGGAGTGGAAGAAGCCCCAGTGA
>TU151271
TTCCCCAGAGTTGTGGCCTTAAATCAGTAGAcctaaatacagaaaatgttccATCTTTCTCATGTAGGACACTTGACGCCCAGGCCTCGGATCTACAGCCCACACAATCGGACACGCCAAGGGCTGAGGGGCCGAGGAGTAATAACAACCCTGCGCAAAGGGCCGGCGCTCTCGGAGACGGGCAAAGTGCGGAGCTGACCCACCACCACAAACCCAACGCCTGGAAGAAGGAGTTTACACCCTGGTACTCCAATCACAAACAGGAGGAAGTCCAGGGCCAGAGGCGCTACATTTCCACGCTCCACAGAGACCCGGTACCGGCAGCGTGGCCGAGCACCGGACTGAGACAACTGCAGTCGAGCCTCGAACCCGACACATCGGCAGCAAAGcAGCTGCAGAATGCCCGAGCGCAGGTCCCACACACAGGCGTGTCCAGCTCCCTCAGTGACATCCTGAAGGGGGTGCTGTCTCGCCGCAGCTCGACTGTCGCGCCCCGCCTTACGAATACCAGCAAGTCCATGTGGGACCTGAGCCTGTTCTCCACGCAGACGGACTCCATCGAGGACGGCTCCGAGAGGCAGGCGTCTCCTCGCATCTCACAAGCCCAGGACAAAGACCCTTACAGCCTGAAGGTGACGCCCGCAGTGGCCCTAATGAGGCACCGAGGGGACGAGTCCAAACCCGCCATTTCCAACCCCTCACCCCGCGAATCCTTCCTGCCCACCCTGAGACAGAAGAGGAGGAGCTTCAACTTCCTGAAGGAGTGGAAGAAGCCCCAGTGAGACCAGCGGACTGAAGGGGCCAACAGATCTTTTCTAGGCCCCGTTTAAGCCCGTTTAggatgagagaaaaaaatcccaTCCGAGTTGCTGCATTGACTGGGAAGGGAGCTGCTTCTGGGTGGATTTTACCACTGATCTGCAGTACCCCACAATATCCACTAGAGGGATGCCACCCCTTTTGTGAGAATAAAATCACTGTCATTATCATAAACGTTGCCACTGATCTGTTATTGACTTTTTGGTTATAAGGAAGTTTATTCCTGTCATCAGTGATTTGTTACGCAATACAAATCATAAACTGTAAAGGAGCTGAAAAGTGTGGAATGTAACAAAGTGTTTGAAACGCTCCCAGAACgtttttgcaaaaaaaaacaccacagaagTGAAATTGAAGACCAACATCATGAAACTGGTACGTTAAAAATGGTCTTCTCAGCACTTCTGCTTGGGAAAAGTAGATATGTACCttttaggttgtttttgttttttaaatctgcaatatctttacaataaaaaataatgaaaatgaaaagttg

Function

GO: NA

KEGG:

id description
K23930 FAM83; protein FAM83

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002085 True 1953 mRNA 0.62 8 2921788 2931018
TU151271 False 1318 TUCP 0.51 4 2921252 2923221

Neighbor

gene id symbol gene type direction distance location
AMCG00002077 utp3,LOC102785935 coding downstream 48979 2861912 ~ 2872273 (-)
AMCG00002079 NA coding downstream 64125 2856058 ~ 2857127 (-)
AMCG00002072 foxj3,LOC103362994,LOC101077580 coding downstream 193984 2701238 ~ 2727268 (-)
AMCG00002069 NA coding downstream 231665 2682702 ~ 2689587 (-)
AMCG00002071 NA coding downstream 240764 2678384 ~ 2680488 (-)
AMCG00002084 NA coding upstream 4503 2935521 ~ 2946153 (-)
AMCG00002083 NA coding upstream 25863 2956881 ~ 2961258 (-)
AMCG00002089 NA coding upstream 112630 3043648 ~ 3066913 (-)
AMCG00002090 NA coding upstream 156526 3087544 ~ 3089884 (-)
AMCG00002092 NA coding upstream 164702 3095720 ~ 3110908 (-)
G120683 NA non-coding downstream 224865 2695581 ~ 2696387 (-)
G120601 NA non-coding downstream 696847 2223343 ~ 2224405 (-)
G120589 NA non-coding downstream 758396 2162641 ~ 2162856 (-)
G120574 NA non-coding downstream 925185 1995768 ~ 1996067 (-)
G120573 NA non-coding downstream 927229 1993728 ~ 1994023 (-)
G120743 NA non-coding upstream 22255 2953273 ~ 2953482 (-)
G120746 NA non-coding upstream 54555 2985573 ~ 2986779 (-)
G120754 NA non-coding upstream 77883 3008901 ~ 3020156 (-)
G120760 NA non-coding upstream 109530 3040548 ~ 3042500 (-)
G120789 NA non-coding upstream 160758 3091776 ~ 3092899 (-)
AMCG00002078 NA other downstream 73315 2845382 ~ 2847937 (-)
AMCG00002044 NA other downstream 1430685 1486551 ~ 1490567 (-)
G120748 NA other upstream 64490 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 182424 3113442 ~ 3128440 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other upstream 242487 3173505 ~ 3186353 (-)
AMCG00002097 NA other upstream 476467 3407485 ~ 3466461 (-)
G120907 NA other upstream 782849 3713867 ~ 3716252 (-)

Expression


Co-expression Network