AMCG00002088 (ybx1,LOC100194660,LOC107733967)


Basic Information

Item Value
gene id AMCG00002088
gene name ybx1,LOC100194660,LOC107733967
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2995378 ~ 3004718 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002088
CAATCGAATGCGAGAGCGGGCAGTTGATGCATGATTGACGGCGATGAGCACCAATAGGGTTAGCGATGGGCGGTGACGCTTGCTGAGGGACAGGTGTGATGACCAATCGGGTCGCTGGATGGGAGGGTGAATCTCTCGGCATATCGCCCGGTATCGGCTCGCATTCCGTCCAGTTCGATCGGCAACGGGAGCGGAGAAAGGAAAGCTGAGAGCCGAAGGCAGCAGCCCCACCACCGCCGGCCCAGGTTACCATCAAGCACCGGGAAAACACACCAGAGAGCCACCGCCGGCACAAGTCTAGTTACCAACCAGAAACCACCATGAGCAGCGAGGCCgagacacagcagcagcagccgccaGCACCACCACAGCAGCAGCCAGAGCCTGCCGAAGCGGAGAGCCCGTCCAGCCCGGCAGCCACAGCTACCGCGGGGGATAAGAAGGTCATCGcaACAAAGGTCTTGGGAACAGTGAAGTGGTTTAACGTAAGGAATGGCTACGGTTTCATCAACAGGAATGACACAAAAGAAGATGTATTTGTACACCAGACCgccataaagaaaaacaacccaaGGAAATACCTGCGTAGTGTTGGAGACGGAGAGACAGTGgagtttgatgtggtcgaagGGGAGAAGGGTGCAGAAGCAGCCAACGTCACCGGCCCCGGGGGGGTCCCAGTGCAGGGGAGCAAATACGCCGCAGACAGGAATCGCTACAGGCGCTACCCCCGCCGCCGCGGCCCCCCCCGCAACTACCCACCCAACTACCAAAGCGACGGGGAGGGCGAGGGCAGCGAGAAGAGAGAAGGCGCTGACAGCGCGCCCGAGGGCGAGGCGCCAACCCAGCAGCGCCGGCCCTCCTTCCCCCGCCGCCGCTACCCTCCCTACTTCGTCAGACGGCGCTATGGCCGCCGCCCCCCCTACACCAACACCCCCCCACGAGGAGAGATGACTGAGGGTGTTGAAGGGGAAGAAATCCAAGGTGGTCCAGACCAGGGTGCCAAGCCAATGAGACAGAACTACTACAGAGGGTACCGACCGAGATTCACAGAAAGGGGGCCCCCTCGTCCCAGACCAGTGCGGGATGGTGCCTGCGAGGAGGACAAGGAGAACCAGGGTGATGGCAGCCAGGGCCAGGAGCCCCGCCCCCGCCGATACCGCCGCAACTTCAACTACCGCCGCAGACGCCCACAGAACCCTAAACCTCAAGATGGCAAAGAGAACAAGGCAGCCGAGCCACCAGCTGAAAAAGCGTCCGCTCCCGAGGCCGAGCAGGGCGGGGCTGAttttgtcaaCATGAAGAAACATCTGAAATGAAGACACGAGCAATAACACCCAGATTTGACTTGACGATCAGCGACAGCTTGCAACACGTTTGACCAGATTACACCGATCGCCTGCAGAATCTATGcagccctgtttttttttttcctcataacTTTTATCTGACAgcttaaagaaaaagaaaaaagaaaaaaaaaaaa

Function

symbol description
ybx1 Enables C5-methylcytidine-containing RNA binding activity and eukaryotic initiation factor 4E binding activity. Involved in embryonic morphogenesis and mRNA stabilization. Acts upstream of or within several processes, including negative regulation of mRNA processing; negative regulation of translational initiation; and oocyte maturation. Located in nucleus. Is expressed in eye. Orthologous to several human genes including YBX1 (Y-box binding protein 1).

NR:

description
PREDICTED: nuclease-sensitive element-binding protein 1 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09276 YBX1, NSEP1; Y-box-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002088 True 1486 mRNA 0.58 8 2995378 3004718

Neighbor

gene id symbol gene type direction distance location
AMCG00002082 NA coding upstream 8599 2967365 ~ 2986779 (+)
AMCG00002081 LOC106572212 coding upstream 43049 2947466 ~ 2952329 (+)
AMCG00002080 NA coding upstream 84843 2906865 ~ 2910535 (+)
AMCG00002073 ppcs coding upstream 133592 2857667 ~ 2861786 (+)
AMCG00002074 rimkla,LOC106567384 coding upstream 153415 2831684 ~ 2841963 (+)
AMCG00002087 NA coding downstream 20346 3025064 ~ 3040023 (+)
AMCG00002086 NA coding downstream 80294 3085012 ~ 3087293 (+)
AMCG00002100 NA coding downstream 475126 3479844 ~ 3489633 (+)
AMCG00002101 klhl21 coding downstream 514597 3519315 ~ 3523845 (+)
AMCG00002099 NA coding downstream 556900 3561618 ~ 3562267 (+)
G120692 utp3,LOC102785935 non-coding upstream 129354 2861915 ~ 2866024 (+)
G120674 NA non-coding upstream 298971 2696064 ~ 2696407 (+)
G120602 NA non-coding upstream 769398 2225780 ~ 2225980 (+)
G120566 NA non-coding upstream 792007 2202617 ~ 2203371 (+)
G120565 NA non-coding upstream 810398 2184780 ~ 2184980 (+)
G120755 NA non-coding downstream 35849 3040567 ~ 3042435 (+)
G120763 NA non-coding downstream 38922 3043640 ~ 3046804 (+)
G120774 NA non-coding downstream 87076 3091794 ~ 3092899 (+)
G120778 NA non-coding downstream 94889 3099607 ~ 3100142 (+)
G120779 NA non-coding downstream 95560 3100278 ~ 3101046 (+)
G120742 NA other upstream 35903 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 141251 2852154 ~ 2854127 (+)
G120518 NA other upstream 1054562 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 2002614 682670 ~ 992764 (+)
AMCG00002098 NA other downstream 529096 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 2214112 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 3581936 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 4389082 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 5734053 8738771 ~ 8792478 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G216217 NA non-coding CI01000050 null 6697924 ~ 6705911 (-)