AMCG00002089


Basic Information

Item Value
gene id AMCG00002089
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3043648 ~ 3066913 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002089
atggccctCAGTCTCTGGGTCGGGGAGAGCGCTTTATTCACCCCCGTGGACTCTCCTTTCTGTCGGCACCCACGTGACTTTGTTTTGACAGTCTGCGTCTGGAAAATCAGGAACGCCAACATAAATGAGGACTCGGCAGAGCAGGCTGTGTTTCTAAAAATAGGGGCTGGAGTTGGGCTGGGCACAGCTCTGTCTCTGGACCGTGGCGTGGGGGGGTCCTGGCCGGGCAGGATGCACTGCTCCTGCCACAGAGGGGTGGAAAGGGGAGCTCAATTGTTCGACAGCTTGATGCACTTCTGCTTTTATGAGCAGCTCTTGGATCTGCACTGGGCTGCTTGTAGTAACACTGAGCTGTTGTGTGCGTTCACAGTGTGCCAGTGCTTCGCCGTGCTGGAGGACGGGGCCTTGGCGCACAACCTGCAGGAACAGGAGATTGAGCAGTACTACTCCTCCAACGTGCAGAAGAGCCAGCTGGTGCAGAGGGACACCCGTATTGCCCGCCGGCTgcaggacgaggaggaggagcggTCCCGGCGGCAGCAGGACACGCGCCACATCGAGGAGCAGGACTCGGAGTACGCCCGGGCGATCCAGGAAGAGCTTCAGAGGCGTGCGGAGGAGGCTCTccggagggaggaagaggacgaGgaaataGCCAAACGTTTACAGCAAGAGGAGGAGCTAGAAATCAGAACACAGAGACTTGACAGCATTTGCCAACGAGATGAAGATGGCTTCCCTAGTAATGAAGGTACTGTCACAGGTCCGGTTTCAGAGAGAGGGGAACACCGATGTGGCACAACGCACATATCTTAAATATGGATggggtttctgtttgtttttcaataagtAATGAGTGAAGCCTGCTCTTATCAACACTAGCACCCTGAGGGAAAACATGTTCCAAATCTTGtgcattcattatttgaatatgttttCGCTAAAAGGTAATACGATATTTATACACGGATGCCGTACAAGTTTGTTGACTTGCAAGAAGCCATTATTAGCCACCATCACGCAACTGGACTTAAAACGGAGATGGAAGtgatataatataatagttAGCAACTGTATAAATCGAGTTTATGAGCTCCAGGCTTGTGTGCAAATTGCGTCTATTAATATTTTGGAATTTATTACCACCACATGTATCAGAGTGCACATTTCCGAAAAACTAACAGTGGCAAAACCCAAAATACCCACTTCCTGGTTCTCGCTGTATGTATGACCCTGCAGCTGCTAAAAAACAGACGAATGATCACATGGCTACTCACGGTGAGACTCATCCCCATCTCGGTACCTGTGCCCAGCTGACTGTCTATCTGATTGGTCTGCTGCTATACCCCTTTGTCAGGGCATCAGCAGGGCGCAGTCAGGACTCGGGGTGTGGTGAGGGGGGCAATTCTGTGTTGCGATGCTTTCGATGGGCAGCTGAGCCAGGGTCCGTCTGTGCTGCCTGATTTAGACCACGGCGGCTCGACTGTGGTTTGCAGGCAATGACTGCTTTTAGCTGCAGATCAGTCGCTGCCAAAAGTAATTTCCCTAAAACTGTTAAGCAGAAGAGAAGCTGGCACCGAGATGCAGCCACCCGTTCTGCACAAGCAGGCCGAGGAGTTCAGTGGCACCCAACAGATACCCAGCCactacctgtgtgtgtgtggtctctctctctctctccctcccatctATCAGCCTGGCTTTTAAACTGCAGTCATCACAGCTCATGGTCATGGACAGCTGAGGTCCTCAGTCTGGGGTGTTTGAGGTCGTTAAAAGTGCCGTCTGGTCGACATTTTGTGAATtggtacaaaaacaaacaaaaaagagaagtgAAGCCAAATTTGAGAACAAAAAGATGCCTAAGGTTGCATGTTGTTCGTTTGCTCATAAGGCCCTGATGTGGACTTGCTAAATAAAGGCCCTGTAGGATCAGGTGACCCAATCATGTGGGGGGAGGCATGCTATACTGTACCCCACCCTCATTTTGCTGCTTGTTTTGGTGTCTGGCAGCGGTTCTCGGTCTGAGTACAGAGTGGACCTGTGGTGCAATGCCACTCTGCTGCCAGTATTGGGCAACCATGAAATCACGTTTTGAGCAATCCAGTGAAACTGACAGATGAACCCTGAAAGCACAGCGCCCAGAGGAACCATCAGAGGGTGGGAGAGGGACCCCATTTGACTCCCATCCATCTTAACacgtttttaaaaatgttttaaaagctgcTGCAGCATCGTGCATTTGCTTAGCTCTTCGCTGACAACATCCACACAGGTTTTATACGTCTGGGTCCAATGCAACGTCTTCCAAAATACCCACTTGCATTCACACTGAGCCCTCAGGCTGCTGTCTGGGTCCCAATAGGAGCCGGGGGAGACGGACACACCTGTGCACGTTGACATCTTGGAAGTGATTAAGAATGTAATTGATACGCAATAATGTGTTATGATGCTGATTATGCTGAGAAAAGGCTTGAGCAGCCCAGGGAACACAGAGTGATGTTTGTGTCCGCTGTATTGGCCCCTTAAATCAATCCCAGATCACAGGTATTGATTCACCAAggtctgctttaaaaaaatgaatgtggaGTGCAATAGAAATTGACAAATCATCATGTTTTGGGTTTATTATGATCTTTACTGAACAATTGTAACGGGCAAACGGTTTCATTTCTGACCGCAGTGCTTTTTCAGCACAAGATATCAACTGATTTCATGTCACTTTTCAACCGATGacatttatgtgtttttctttaacttaCATTTGAAATCTATTAATACTTATACTAAGACAGAAGCCTATTTTTGAAACCGGAGAAGGCGGTTCCTTTTTTCTtgcaatgcagaaattaaactgTGTGCCGTGCTGTTTTTATATTGATTCAATGGTGATTTCACTCTGTGGTTTAGTGCGCCCGTGCAGTGAGGTAGAGAGAAAGGTGGGCGGAGGGGTGCGGTGCTGATCGGTGTGCAGGTCTGGCTTTGGGGCGCTGTGTTGTGTAGCTTCACTAACCAGTCCGATTCAGGCTGCATGGCTTAGACCGTCGACCTGTGTTCCCCAATTTCTGGAACAGCCTCCCTTTGCAGTTCCTCTCGTCCCTCAGATCCGCTTTGCCATGTCCTGAGTCTTGCACACAGCTGGATCAGAGATGTTAATGAACAAACCTTTCTTCTCCCTTTCACTGTGTCACGAAACCCCATTGAAACCACTCTCCTCTTCGCCACGATGCGACGGTAATAACAGCTATTCACGTCGCTGTGTAGTTTTGAATTTGACCAGATGTTTCCAAAAGCTGGTTATTGAATTGAATACAGACTGTGTACACTTTGACTCATGACAGTTTCTGTGAGGTGGGGAGTTTTGTAGCCTAcgcttttctttttattagaCAATTCTATCTGCTTCTGATACGACTGGGTTTGAGCCACTGAAGCATAGCTAATTACACATTCATTTGATCATGAAGCACTTTGAAGCGAGAGTCTGCGCACAGGTTTCAGTGCTGATGAAGGAATGGCTGATTGCTATTCCTTCTGCTTTTACaatgtgctttgctttcacGCTTACGATTTGATTGTCAAGAGATCCCGTAAATGTGTATGCAAGGGGCTGACTTAAATGCAgttcatttatattatatattttgttaatttaaaaaaaaatgtttttcttaatgtaattgctattttgaatatatttcttggcccttatccagggcgactcaCACTAATGCATTAAGTCAAATGCTGGGCTGTTTCTCCCTGTCCAATATCACCACCCCCCCGTAGTGCTAATAGGCTGTTAATCCTGCCGCTGTACCCCACAGATTGTGTGCCGTCGTTCACCAGTGACCCATGTGTGAATGTGCCTCACTCTTGCACCACTAACCCCTCACCCCCCGACCCTGctttgtgtttgcatgtttggCTTGATTAAAGAGCGCTCCAGCCCGACAGCGCCGCCTGCACAGGACAGCACCattgagggagagggagagcgagagggagaggcCTGTGAGCCTCCAGCCAGCAGGGGGGACCGTCCCTCTTCTCCCACGGAGTCTGACGGGGAGTCCGAAGAGCTCCGGGGGTCTCTCACTGAACCCCAGCGCTCTGGCGCCTCACACCACGCCGCCCCCAGGGTGGGCACGGGTCAGGCCGGCACAATGAGGCTCATTAAGAACTTCCTCAGTGACTCGGACACCACTGGGGACAGTCCCGAGGATGAGGAGCTTCCACAGTCGCCCagtcccccccgcccccagccACAGCGACCGCAGAACCGGTTTGACACGGCCCCCTGCCCTCGCCATGGCCACAGCCGTGCCCAGGGGGAGCGCCCATGCACACTCCACGCCAGTTTTAGGGTCGGGGAGACGGACAGGGGAGAGGGAGGCGGCAGCAGGCAGCGTAGGGACCCAGTCTACCAGGGAGAGAGGGACCGAATGTCAGGGGGACAGCACAGGGAGAACGATGGGCGGCATAGCAACGGTTACCACAGAGGTGTGAGGGACGAGGACAGGGGAGTGACCCATCACAGGCGTGGCGATCTCGGAGTCCAGGGCAGGGCGAGCAGCTGGAGCCACAGGGAGAGCAGGGTGTCCAGGCATGTCCACTTCAAAGATGAGGGCTGGCATTCGAACAGCTACCACGGCCATGTGGGTTTCGCAGACAGGGGTGTGGCTGCGAGACACGTTTACCATGGGGACTATAGGGAAGGGAGGAGTAGCTCAAGCAGGGCATACCATACAGAtgacaggagagagggagacaggaggCATCACCATGACGAGTTTATACACAGGGACGTAGCTACGCGACGCAGTTACCACAGAGACTCGAGGGAGAGGAGGCCAAGCTGGGATGGAGGCGGCCGGGTAGACTCTAGAGACGAGAGAGGGTACAGCCATAGCCGCTGGAGTCAGGAGAGGGGCAGTGAGCACCGCGTCCGAGAGGACAGGGTCTATTACCGTGGCCACTGCGGTGGGTCCAGCGAGGAGGACGGCGGGTATCACAGGGACGCGGGGGAGTGGGAGGGCAGGGGCTGCCACAGTAGCCATCGGGCCCCCAGGCAGAGCGAGGAGGGGGCGGGAGAGCATAGGCAGGAGGGGCAGAGGGACAGAGGCAGTGGCCCCGGCGACCGCAGGGTGAGGCGGGCAGCGAGCGAGCGTTGGCACAGGTACGAGGAGTCCAGCTCCGAGGAGGACGCGGGCAGCCGGGAGGACCGGAGACGGCGGGGGCATTCACAGCGCAGGCACAGCCGCACTGCCAGCTCAGCCTCTCCCAGGAGACCAGGTAACGCGGCCCCCTGCGGCCCCTGCCAGGAGGTAACTCATGCCTCGACCTGGCTCTCGTACAGCAGAGGGGTCCTGCCGCTGACGGCCCAAATTTCATGTCCTGAAATGAAACTAACAGATTGGACAGAACTGAACGTACTCCAGAAGctgattgatttaaattgtgtcGTGGTGGATAAAAGTCAACCGAAGATGTAATGATTGGAATAAAGGAAGTCATCAAATTAGCAAATGTAATTGGCGGTGATCTATGATACGGGTTGCAGTCAGTCTGCCCTAAGATGACACATATCCCACTAAACCTGCAGAGTTGGGGAGGTTCTTTGTCTGTCACTGTTTAGTTCCATTTAATTTCCGTCCCCTGTGGCAGGACCCCTATGAAGCAGATTGTGCTGGGAGCTCCGGACTCCTGCTGTCTTACGCCGGACGTCTCGTTCTGACTTTCCTCTCCTCAGACTGGGGCTTGCGCTCATCAGTCAGATCCCATCAGAGCACCGGGGACTCACATGGCCTTCACACGGCCTGCCGGGTTAAACTGAAACTGTCTATGTGGAACATCTGGCtccagatgtgtgtgtgattgttgaCATCTTACTCCTGGTTGAGAGGAGCGAAATCTAGTAAATTTAGAGGAAATGACCAGATGAGCACAACCCAGAGTCTCAGATTTTTACAGGTTCTGTAAAATGATCGTACGACTTgtttgaggaaaaataaaagttctgATTGATCTGGTGTTTGGTATTGCAATCAAAATCAACCTGAGTTGttgtgttgctttattttttgggggCTTTATCTCCTTTCCCTTTCAGCTGGTTTACCCGAGAGCcgggtgggggtggtggtggtgttgtgtcGGGGAGTGTGGTACTGAGCCGGAATGACGCCCGTGTTTTGCAGGTGCCGGGCCATGCCGTGCCGGGGCGTCTCTGGAGCTGGGGGCGCTGGAACAGGTCCTGCTGGACGAGGAACTGGCCCGCCggctgcaggaggaggaggagctgctgctgagaAAGAGCCCCCAGTCGACACCCACCCCCCAGAACCCCGACCCAGAGGGAGACTTCATCGCAGCGCAGGTGGCCCAGGACGAGGAGATCGCCCGCTTCATGCAGCGCCAGGAGATGAAGACGCAGCGCCGGTCACGCGACTTGGAAGGTCAGGAGTCACAGCATGAATACAGAGACCCCGGGGACCCGTCGGAGAGGAGGAGTGTCCAAGAGAGAAAGACGGAGGCCCCCCCGGCCCAACGGGAGCGGCTGGACTCGGAGGGGCTGCCCTCCCCTGGAGAGGACGGGTCCCCGGAGCGCCACACCTCCCCGGCACCTCCGCTCACCCCCCCTGGCACAGCGCTGCAGCAGCCGCCCATCAGAAACATAGCAGAGGAGCTGGATCCCACCTTCAAAGGCAAACGGCAGGAGAGCTCTGCATCCGGACACACCCTGTCCGCATCAGcgCACTACCAGCCCAGCCCTGCCCCTCGTTTCTTTGACTACTTGGAGGACCGCAGCGAGCCCACCTTCATTCCCCCAACTAAACGGCAGAGTGACAAGGCTGGGCGTCCCAAGACCAAAGACAAGAAGGAGAGCTGCAAGCAGCAGTGACGATCCTCCGCCGGCCTCatcccatccctccctccctccagccCCTGGTCTTTCTACTGGCAGCAGCACTGCCGGCTCGCTGAACTGGACTGAAGCGAACAAAATCAAACGCACATCTACACCAAGATAAAGAAGTGTCAGGAAGCTGGTTGTTGGAGAATTAGCTGTATCCCCCTTGTGAACCCTAGACTGGCCAGCCCTGAGATTTGGGATCTAGGACTGACTTAAACATTCGCTTCCATGGCTGTTTTTCCTCCAGCGTGTTTTACAACAACCTCTCTCAGATACTTAGAAAGCAGAAGAGGGACCTGTAGGCCCTCCACTAAAACGCTAAAGCACTCCTCTAGGAATATAGGAATATAAATACTGACATTTCTCAGGACCTGACTGTCAGTTCAGGGCCTTTGTTATAATGTCAGTTTCAgagtcatgttttattttcatgtaaatatattgtaagttGAATAAGCTAGTAAAAGCAGGACTTTACTAGAACACTACCCTTAAATCCATGTGATCCAAAGATGTATAGGGACACACTTTATCAGTCTGTAGAGGTGGAGTGCAGGAAGGTAGGAGAGACCTTTGTGATGCCTTGATTGTCTGACAGACGCCCCTCCACACAACAGCGTGATGGTTCAGTCACCCTCGTTTACTCGGCGTCGTGACCAACCCAACCCATCTCTTGGCCCACTGTGCGCTCAAACTCTTgaccccaacacacacagaccattAGGGGGAGAacttcagaaacacaaaatactcATCCAAAGTCTTCCGATGCTGTTGGggatgtggggggtggggggtctatGCTCTGTTCTTTGCAGCCTGTCCAAGGATATGAAAGTGCAAAAGACTTCTGTGAAGATCGTGGATCCCTCTGTGTGTGATGTCTGTAAGAGGTAGGCCCACGTTACCCCCCAGCTCCAGAACAATACGCGTTTCCACAGCCTCCCGGTCCAAGTGGGTGCTCTGACCCCTTACTCTCTCCTAGAGAAACGGACATCCACTCTCTTGCTCACTTGTTGGTAAATGCAACAATGCCTCACAATACTTAGTAAGAACATGCTTATCATAGTCATAGTATGATGCCTGTGTCAATAATTATAATGCCTTTTAATACAGAGTAccttgcaaaaagaaaacacctaAGCACTACAAGTTCACACGCTATACATCTATGTAGGTCACTACATTCACACGCTGTACATACGTGAGCGAATCTTCCTTTCCTATTGACTGCACCATTGCAGTTTCTCAGTAGGCACTGAACAGTATTGTTGTATTGGATAGTATATTATGGTACTTATATATGAATGACTTTCCATTATGGGTTTAcactttttgtataatttagttttatggTTTACAACATTCAGGAAGTTAAATGTCTTCAGAACATGTTTTATAAGGATTGGGACCGGTttggtttaaaaatgtcattcttttttatgtttttatttttaatgtgacatTGTAAATGTATCCGTGTTTCGAAATGTCTTCACTGTACAGAGAGCGCCACGTCCTCCGGGGACTTCACCCGAGAGATTAGGGTAAGGGTGTTGCAAGACTGGCGATAAAGGTAACAGGTTTCGGTGCATCTGCTGCAAATTTAGCGGCTGTAAACAGGGTTGTGAAATGGATTTTACAGTTACTTCCCCCATTACAGCAACGTCACTTTTATAGAGCTTTCAACTCAAGGATTCCAATCAAACCCCGAGCTGACCAAGTAACCACGCTGATATCGGGAGTCGTGACACCAAGACTGTTGAATACACTGCGTTACTGGCTGCCCGATGACGCCAGGACCCCAGCGGTGCGGTTTGATTGTCTGAAGCAGCCGAGCAGCGCAGGGGATATTTCTGCCTTTTCAGGGGCGGCCCCGGAGATTACAGCAGAGGAACACAAGTCATTGGTCTCCGTGGCAAACATGGACTTTGTATTGTAGCCAACACTACAGAACACAACAGTGGAAGTGATGCTCTTTCCATTAAGACAGCTTTTGCCTTTGCCCCTAATTCCTGTTGCCAATGTTGTCTGTTGCTCTGGACCTCCcccgcgtgtgtgtgtgctcactAAGGAATCGTGGCGTTATCAGAATAACcttgacatgtttttgtttaattacgATGATGGCGATTATTGTAGAttgtaaatccttttttttttttttttgtattttgatggCATATTGAGAAACTCAAGGCACTCGGTTTGCTTCGTCACACCTGAGCTCAAGTCTGGTGTCTCAGACCTGCGGTGAAAGACCTGGCACTGATGTGTCCCATGCTGCAAATGCACCCCCATCGTGTAATTTCAAACCGTTTAAAAAGGGCTAGTGTAACGACAAAGGCCTTTAGAATTGAATtgttctatatataaatatttgtttgtttttgtattgttttgttgcctttttGGATTCCCGCCATCACTGTGTTATtctgtatcaaaataaacagtgtTGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002089 True 9380 mRNA 0.51 10 3043648 3066913

Neighbor

gene id symbol gene type direction distance location
AMCG00002083 NA coding downstream 82390 2956881 ~ 2961258 (-)
AMCG00002084 NA coding downstream 97495 2935521 ~ 2946153 (-)
AMCG00002077 utp3,LOC102785935 coding downstream 171375 2861912 ~ 2872273 (-)
AMCG00002079 NA coding downstream 186521 2856058 ~ 2857127 (-)
AMCG00002072 foxj3,LOC103362994,LOC101077580 coding downstream 316380 2701238 ~ 2727268 (-)
AMCG00002090 NA coding upstream 20631 3087544 ~ 3089884 (-)
AMCG00002092 NA coding upstream 28807 3095720 ~ 3110908 (-)
AMCG00002093 LOC106567259 coding upstream 67195 3134108 ~ 3146480 (-)
AMCG00002095 NA coding upstream 79691 3146604 ~ 3147047 (-)
AMCG00002096 NA coding upstream 207510 3274423 ~ 3274918 (-)
G120760 NA non-coding downstream 1148 3040548 ~ 3042500 (-)
G120754 NA non-coding downstream 23492 3008901 ~ 3020156 (-)
G120746 NA non-coding downstream 56869 2985573 ~ 2986779 (-)
G120743 NA non-coding downstream 90166 2953273 ~ 2953482 (-)
G120683 NA non-coding downstream 347261 2695581 ~ 2696387 (-)
G120789 NA non-coding upstream 24863 3091776 ~ 3092899 (-)
G120841 NA non-coding upstream 426043 3492956 ~ 3494050 (-)
G120842 NA non-coding upstream 433368 3500281 ~ 3502928 (-)
G120849 NA non-coding upstream 468909 3535822 ~ 3536525 (-)
G120853 NA non-coding upstream 471849 3538762 ~ 3540826 (-)
G120748 NA other downstream 38731 2995508 ~ 3004917 (-)
AMCG00002085 NA other downstream 112630 2921252 ~ 2931018 (-)
AMCG00002078 NA other downstream 195711 2845382 ~ 2847937 (-)
AMCG00002044 NA other downstream 1553081 1486551 ~ 1490567 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 46529 3113442 ~ 3128440 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other upstream 106592 3173505 ~ 3186353 (-)
AMCG00002097 NA other upstream 340572 3407485 ~ 3466461 (-)
G120907 NA other upstream 646954 3713867 ~ 3716252 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other upstream 717323 3784236 ~ 3786544 (-)

Expression


Co-expression Network