AMCG00002091 (LOC103354943,LOC102299287,LOC101482394,LOC108441428)


Basic Information

Item Value
gene id AMCG00002091
gene name LOC103354943,LOC102299287,LOC101482394,LOC108441428
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3173505 ~ 3186353 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002091
ATGGAGAACCCGGACATTGTGCTGGTACACTACCTGAACGTGCCTGCCATCGAGGACTGTGGGAAGCCATGCGGGCCCATCCTGTGCTCCATCAACACCGACAAGAAGGAATGGGCCAAGTGGACCAAGGAGGAGCTGATTGGCCAGCTGAAGCCCATGTTTCATGGCATCAAGTGGACTTGCAGCAACGGGAACAGCAGCACTGGCTTCTCTGTGGAGCAGCTGGTGCAGCAGATTCTGGACAGCCACCAGACCAAGCCGCCTCCCCGGACTCACAACTGCCTCTGCACGGGCAACCTGGGCGCGGGCAGCAGCGTGCACCACAAGTGCAATAGCGCCAAGCACCGCATCATCTCGCCCAAGGTGGAGCCACGGGCCGGGGGCTACAGCAGCGCCCACTCGGAGGTGCAGAACAACGACGTGTCGGAAGGCAAGAACGAGCACAGCCACGGAGGGGGGGGAGGAGGCGGCAGCGGCAAGGGGGCCGGGGGCGGCGGTGGTGGAGGGGGAGGCGGCACGAGCACCCGGGAGAAGCGCAACGGGAAGGTGCCCAAGCCGGTGCTGCTGCACCAGAACAGCACCGAGGTCTCGTCCACCAACCAGGTGGAGGTGCCCGACACCACGCAGAACTCGCCCGTGTCCATCAGCAGCGGCCTGAACAGCGACCCCGACATGGCCGACAGCCCGGTGGTGACCGGCATGAGCCACGTGGCGTCGGTGATGAGCAGCCTGTCCCAGAGCGCCGCCGTGTTCATGTCCGAGGTGACGGGCGACCCCATCTACAGCATGTCCCCCACCGGCGGCCCCAACGCCCACCTCATGGGCCCCGACGCCTCGCAGGGCCTGGTCTTGGCCGTCACCTCCGACAGCCACAAGTTTGCCTTCCCCGGCGCGGGCACGGGCGGCGGTGGGGCCGGCGGCGCGGACGGGCTGGCCATGCTGTCGGCGGCGGGGGTCTCCGAGGAGCTGGTCCTCTCCAGCAGCCTGGACTCCGGCGGGATCAAGCTGCCCGAGACCACCATGAACTTCGACCCCGACTGCTTCCTCAACAACCCCAAGCAGGGCCAGACCTACGGGGGCAGCGGCCTCAAGGGTGAGGGGGGCTCCTCCGGcgcgtcctcctcctcctcgggaGGGCCTggcagcagcggcagcagcaacGGGAGTCTGCAGCGCTCGCCCCCTGTGTCCGACCCCGGCTACGGGTTCAGCGCCACGCTGGTCAAGACCGAGATCAAGACCGAGGACACGTCCTTCGAGCAGCAGCTGGCCAAGGAGGGAGGCTACCAGGTGGGGGCGGTGGTGAGCGGCGGGGGGGGCGGCCCCGGCTCCTCGGGCCCCGGATCGGCACAGGGCTCCCTCACCCTCACGCCCGCTGGCTCGCTGCTGCCCTCTGGCGGCGGCCTGAGCCCCAGCACCACCCTGGAGCAGATGGACTTCAGTGCCATTGACGCCAAGCAGGACTACTCCTCCTCCTCGGTGTCTGGGGGCTACGGCCAGGCCATGTCCAGCCCCCACCTCACCCACCAGAGCCGCTCGCCCAGCTTCTTCCTGCAGGAACCCCCCCAGCCCCCGCAGCAGCCCCCCAACCAGCAGGGCTCGTCCCAGAAGAGCCACCTTCTGGAGCAGAACTCCCACGACTCTGGCGCCACCTTCCTGGGCCTGCAGGTGGTTAAGACCGAGTCCCCGGGCGGTGGCGGCGGCAACAACGGgcacctccaccaccaccacagccACCAGAGCCAGCACACGCCCCCCAACTGCAACGGGGGCTCCCCCGCAGAGGGGCCCAACCCCGGCCAGCcctccctgcagctgctgcagtaCCAGGGCGGCTTCCCCTCGCTGGGCCCCGAGCACGAGGAGGTGGTGGCCCTGGAGCAGCAGGGTGGCGGCGGAGGGGGCGTGGGCGGCGGCCAGGCGGGAGGCTCTGAGAACCGAGCGGACGGGCTACTCAAGGCCGGGGATCACCTGCAGGCCTGCGGAGGCGGTGGCGCCGAGGGGGGCAACACCGAGCACTACCTGCAGCAGCCGGGCGACAACGGCACGGCCGGGGGGGCGGGAGGCGGCGGTGGAGGCGGAGGCGGGGGGGTGATGCGCAACGGAAACCCTGGCGGCGGCGGCAGTGCCCAGCAGCAACAGCTGCAGCCCCTCCTGCAGGGCCCCGGGCTGGTGCAGGGCCTGTACCCCGGCGTGGGGGGCCACCAGGCACTGGGCGGGGCCTCGGGGGGCGGGGCCGGCGCCGGCGGGGGGGGCATGGAGATCAGCCTGGACCACTTCGACATCTCCTTCGGCAACCAGTTCTCCGACCTCATCAACGACTTCATCTCCGTCGAGGGGGGTGGGGCCGCCGTGGGGCCGGGGGGGGCCCTCTACGCTCACCAGCTGGTGCCCCCCCCGGGTTCCGAGGGGCCGCCCCCTCCCGCGGGACCCCCGCAGCAGGGCCAGGAGGACGGAGGGGCGAGGGGAGCAGCGTACGGCCCGGCGGAGCTCTGCCTGCCACCGTGCTGCAGCCCCCAGTCGCTGGCGGGCGGCGGGGGTGCGGGGCAGGCGGGCGGGGGGGCAGGCGAGGCCGGGTCCCTGGCCTACATGCACGTGGCGGAGGTGGTGTCGGCCGCTGTGGCGCAGGGGGCACTGGGGATGCTGCAGGCCGCCGGGAGGCTCTTCATGGTCACAGACTACTCCCCCGAGTGGTCCTACCCTGAGGGCGGGGTGAAGGTACTGATCACGGGACCCTGGCAGGAGGCCAGCAGTAACTACAGCTGCCTGTTCGACCAGATCTCCGTGCCGGCCTCGCTGATCCAGCCCGGCGTGCTGCGCTGCTACTGCCCCGCCCACGACACCGGCCTGGTGACGCTGCAGGTGGCCGTCAACAACCAGATCATCTCCAACTCGGTGGTGTTCGAGTACAAGGCCCGCGCTCTGCCCTCCCTGCCCTCCTCGCAGCACGACTGGCTGTCCCTGGACGGTAGGGCCCTGTTTGTCTCTCCCCTCCCGCCCGCCGGGGCCCTCCACACATTCGCCGATGAGCCAATCGGCAAGCCGGGGGGGTGA
>TU151382
GGCGGCACGAGCACCCGGGAGAAGCGCAACGGGAAGGTGCCCAAGCCGGTGCTGCTGCACCAGAACAGCACCGAGGTCTCGTCCACCAACCAGGTGGAGGTGCCCGACACCACGCAGAACTCGCCCGTGTCCATCAGCAGCGGCCTGAACAGCGACCCCGACATGGCCGACAGCCCGGTGGTGACCGGCATGAGCCACGTGGCGTCGGTGATGAGCAGCCTGTCCCAGAGCGCCGCCGTGTTCATGTCCGAGGTGACGGGC

Function

NR:

description
PREDICTED: calmodulin-binding transcription activator 1-like

GO: NA

KEGG:

id description
K21596 CAMTA; calmodulin-binding transcription activator

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002091 True 3054 mRNA 0.71 6 3173505 3186353
TU151382 False 261 lncRNA 0.68 1 3176584 3176844

Neighbor

gene id symbol gene type direction distance location
AMCG00002095 NA coding downstream 26458 3146604 ~ 3147047 (-)
AMCG00002093 LOC106567259 coding downstream 27025 3134108 ~ 3146480 (-)
AMCG00002092 NA coding downstream 62597 3095720 ~ 3110908 (-)
AMCG00002090 NA coding downstream 83621 3087544 ~ 3089884 (-)
AMCG00002089 NA coding downstream 106592 3043648 ~ 3066913 (-)
AMCG00002096 NA coding upstream 88070 3274423 ~ 3274918 (-)
AMCG00002104 NA coding upstream 309806 3496159 ~ 3498806 (-)
AMCG00002102 NA coding upstream 316693 3503046 ~ 3510980 (-)
AMCG00002103 NA coding upstream 340999 3527352 ~ 3533819 (-)
AMCG00002108 NA coding upstream 454829 3641182 ~ 3661770 (-)
G120789 NA non-coding downstream 80606 3091776 ~ 3092899 (-)
G120760 NA non-coding downstream 131005 3040548 ~ 3042500 (-)
G120754 NA non-coding downstream 153349 3008901 ~ 3020156 (-)
G120746 NA non-coding downstream 186726 2985573 ~ 2986779 (-)
G120743 NA non-coding downstream 220023 2953273 ~ 2953482 (-)
G120841 NA non-coding upstream 306603 3492956 ~ 3494050 (-)
G120842 NA non-coding upstream 313928 3500281 ~ 3502928 (-)
G120849 NA non-coding upstream 349469 3535822 ~ 3536525 (-)
G120853 NA non-coding upstream 352409 3538762 ~ 3540826 (-)
G120914 NA non-coding upstream 514139 3700492 ~ 3704364 (-)
AMCG00002094 vamp3,LOC107582408 other downstream 45065 3113442 ~ 3128440 (-)
G120748 NA other downstream 168588 2995508 ~ 3004917 (-)
AMCG00002085 NA other downstream 242487 2921252 ~ 2931018 (-)
AMCG00002078 NA other downstream 325568 2845382 ~ 2847937 (-)
AMCG00002044 NA other downstream 1682938 1486551 ~ 1490567 (-)
AMCG00002097 NA other upstream 221132 3407485 ~ 3466461 (-)
G120907 NA other upstream 527514 3713867 ~ 3716252 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other upstream 597883 3784236 ~ 3786544 (-)
G120993 NA other upstream 1028362 4214715 ~ 4219877 (-)
AMCG00002167 NA other upstream 2789372 5975725 ~ 6015393 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_11052174_11076357 CAMTA1 coding CI01000306 null 11052174 ~ 11076496 (+)