AMCG00002094 (vamp3,LOC107582408)


Basic Information

Item Value
gene id AMCG00002094
gene name vamp3,LOC107582408
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3113442 ~ 3128440 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002094
atggcCCTGCTCTTTTACAAGGCGGTGGCCCCCAACACTTTGCATTTCTACCTGAAGGAGAATACTGTAAAGGCCGCCCCGGCTCCAGAAGGCTCTGGCCCCTCCACCGTGGCAGGGGGTAACCGCAGGCTGCAGCACACGCAGGCGCAGGTGGATGAGgtGGTGGACATCATGCGCGTCAACGTGGACAAGGTCTTGGAGCGAGACCAGAAGCTGTCGGAGCTGGACGACCGGGCCGACGCGCTGCAGGCCGGAGCCTCCCAGTTCGAGACCAGCGCCGCCAAACTCAAGAGGAAGTTCTGGTGGAAGAACTGCAAGATGTGGGCGATTTTAATAGCAGTTGTtttgatcatcatcatcatcatcatcgTCTGGAGCGTGTCGCCATAGAgcgggggagaggagaggaataAAGGTGCCGAAgcggagaggaggaggagacgcCCGCATGCCGGTGGCACCAATTTAACCTGCTGATTCCACAGCTCCTGTTTAGGTTGTTGTAAAATATACTGAACTggtggtgttgtgttttttttgttttgtttctttttaatgatgATTGTGACTGGACAAGTGGTCTACCATTCAAACGATACTCTGGTCTGTTTCAAACAGTGCCTGTAATTGTTCAACTTTTCCTTTAATTGAAAAGCCGACCGAGAGAGTCTCTGCCTCCTCCTGCCGAACGCATTATCACTCCGTTCAGGCCGAGCCGAGCTCAGATTCACTCCAGAGAAACGACACCCAGCACTCGGCAAGAGCATAGACCCGACCTGCGTGCCTAATCTCAATACATCGTTATGTAGGGTTGAGACTACAAGTGCCTGTTCATATTTGTGAATTCCAGCGAAGCATTACCAAATCTATAATTAGTGTGTTTTTTAACGTGTGCAAGCCTTCTCTTTGTTGTGATTTTTAAGCGAATATCTCCCTCCCGGTCTATTGACAGACTGTATTacgaatatgtgtgtgtaaaagccAAGTATTTATAATCACTAGAAGCTAAATTGAACCGGCTTGTTAATTTTGATAGATAGTGCAATCGCTCTATATTGGGTTCCGCTTGGGAACAACCGACCAGTTGCATTGTGGGTGGTCCCAAACTCTGGAGTGAGCTTGATTCGCATCGGTCCCAAGGGAGCTGCCAAATATCACCGCCAGTTGCCAAGTAATCCAGGGTGCCTTTTACACCGCGTTGCCTCAAGCGAGGAGAGGGCCAATCCAGAGACTGTCATCAGCTTAGTGTCCCTCGTTTCACTCCGCAGCAGCCATGTGCGTGTCTGCAGTGTGTAATGCACTCCACGCCCCCGCAGCTCCTCCAGTGATTTGAAAGTGAAGCCACGCCCCGATTGCTTTAATGCGGGCTCTCGTTTGTTTTAAGCTGATGCTAATCATGTGGTTTTCCGCTGATGCAGAGCTGGGTTCGGCTTTGTGTAAATCTGCATTCGCTGGATACTGAACTTACGCTTTTGGTTTAGTTCTCACTGCGCTTAATTACAGCGACACCTGAAGctcaatatatatgtgtataatctCAGTCTCTGGAGCGgtcagtctgtctctgtctgtctgtgtgcctgtcGTTCCCGATGCAGAAAGTGCCAAATCCCCCCCCCcgcacacgcacaaacacacccCTGTTCACTGTTCAACAAGCCCGGCCCTGGTCCATCACCGGAATGTGTTGTGCATTACAAACAAGTGCAATTAATAGATATTGTCGCCTTTAAACACTTAACTCCTTTAAGGTTGCTTATATTGTTGTCGCTTAATAAAATGATTCAAACTTT
>TU151364
GTGAGAAAGAAAGGCATCCACCACCCCTGCCCTCCATTTCCTAACACCCTTGTGCTTGAGTGATGGATAAACTCTTCACTGATACAgaccatgttttatttttagcctCGCTGATAATAAGCGCAGATTGGACGGGTCACATGCGCATCACGGGTGGGCAGCGCTGTGGGAGAGCAGCATGCAGAGACGGAGGCCATGGCTGAATACTGTGGTGCAGATAAAACCGGAAAATATTCATTATATCGTTGGCAATGCACGCATTTACTTTCCCTAAGAAGATAGCCATAAACACTAAACTTCTTTGAAATAAGAAAACACTGCAACTAAattcaaactttaaaaacatactCAACGAGAGCAGGCTAGTAAAGTtataatggaaaaaagaaaaacgcttGTAAGTGTCTGTTAGGCCCGTGTGCAAACAGGTCGttttcttgtagcgcagatgtccgcaggtctgcgcagctACACCAATGGCATCGcggggattgtgcagatctgcgcagaagtGCACAGCCCATTGCTGCCAGTGTAACCGGGTGCGCTGTCTCTTTAAATCCTCCAGCGGGCAGAAAGTTAGTGACACCGGCTGACTCCGCCGCAGCGCCCGGACTTCCCGCTTCAGGACCCGCAGACATGGCCGCCCCGGCTCCAGAAGGCTCTGGCCCCTCCACCGTGGCAGGGGGTAACCGCAGGCTGCAGCACACGCAGGCGCAGGTGGATGAGgtGGTGGACATCATGCGCGTCAACGTGGACAAGGTCTTGGAGCGAGACCAGAAGCTGTCGGAGCTGGACGACCGGGCCGACGCGCTGCAGGCCGGAGCCTCCCAGTTCGAGACCAGCGCCGCCAAACTCAAGAGGAAGTTCTGGTGGAAGAACTGCAAGATGTGGGCGATTTTAATAGCAGTTGTtttgatcatcatcatcatcatcatcgTCTGGAGCGTGTCGCCATAGAgcgggggagaggagaggaataAAGGTGCCGAAgcggagaggaggaggagacgcCCGCATGCCGGTGGCACCAATTTAACCTGCTGATTCCACAGCTCCTGTTTAGGTTGTTGTAAAATATACTGAACTggtggtgttgtgttttttttgttttgtttctttttaatgatgATTGTGACTGGACAAGTGGTCTACCATTCAAACGATACTCTGGTCTGTTTCAAACAGTGCCTGTAATTGTTCAACTTTTCCTTTAATTGAAAAGCCGACCGAGAGAGTCTCTGCCTCCTCCTGCCGAACGCATTATCACTCCGTTCAGGCCGAGCCGAGCTCAGATTCACTCCAGAGAAACGACACCCAGCACTCGGCAAGAGCATAGACCCGACCTGCGTGCCTAATCTCAATACATCGTTATGTAGGGTTGAGACTACAAGTGCCTGTTCATATTTGTGAATTCCAGCGAAGCATTACCAAATCTATAATTAGTGTGTTTTTTAACGTGTGCAAGCCTTCTCTTTGTTGTGATTTTTAAGCGAATATCTCCCTCCCGGTCTATTGACAGACTGTATTacgaatatgtgtgtgtaaaagccAAGTATTTATAATCACTAGAAGCTAAATTGAACCGGCTTGTTAATTTTGATAGATAGTGCAATCGCTCTATATTGGGTTCCGCTTGGGAACAACCGACCAGTTGCATTGTGGGTGGTCCCAAACTCTGGAGTGAGCTTGATTCGCATCGGTCCCAAGGGAGCTGCCAAATATCACCGCCAGTTGCCAAGTAATCCAGGGTGCCTTTTACACCGCGTTGCCTCAAGCGAGGAGAGGGCCAATCCAGAGACTGTCATCAGCTTAGTGTCCCTCGTTTCACTCCGCAGCAGCCATGTGCGTGTCTGCAGTGTGTAATGCACTCCACGCCCCCGCAGCTCCTCCAGTGATTTGAAAGTGAAGCCACGCCCCGATTGCTTTAATGCGGGCTCTCGTTTGTTTTAAGCTGATGCTAATCATGTGGTTTTCCGCTGATGCAGAGCTGGGTTCGGCTTTGTGTAAATCTGCATTCGCTGGATACTGAACTTACGCTTTTGGTTTAGTTCTCACTGCGCTTAATTACAGCGACACCTGAAGctcaatatatatgtgtataatctCAGTCTCTGGAGCGgtcagtctgtctctgtctgtctgtgtgcctgtcGTTCCCGATGCAGAAAGTGCCAAATCCCCCCCCCcgcacacgcacaaacacacccCTGTTCACTGTTCAACAAGCCCGGCCCTGGTCCATCACCGGAATGTGTTGTGCATTACAAACAAGTGCAATTAATAGATATTGTCGCCTTTAAACACTTAACTCCTTTAAGGTTGCTTATATTGTTGTCGCTTAATAAAATGATTCAAACTTTCCTCGTGGCCCTTGTCTGTTATTGGTCTGCGTTTG

Function

symbol description
vamp3 Predicted to enable SNAP receptor activity and syntaxin-1 binding activity. Predicted to be involved in SNARE complex assembly. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Orthologous to human VAMP3 (vesicle associated membrane protein 3).

NR:

description
PREDICTED: vesicle-associated membrane protein 3

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002094 False 1793 mRNA 0.49 6 3113477 3128440
TU151364 True 2398 TUCP 0.49 5 3113442 3127944

Neighbor

gene id symbol gene type direction distance location
AMCG00002092 NA coding downstream 2534 3095720 ~ 3110908 (-)
AMCG00002090 NA coding downstream 23558 3087544 ~ 3089884 (-)
AMCG00002089 NA coding downstream 46529 3043648 ~ 3066913 (-)
AMCG00002083 NA coding downstream 152184 2956881 ~ 2961258 (-)
AMCG00002084 NA coding downstream 167289 2935521 ~ 2946153 (-)
AMCG00002093 LOC106567259 coding upstream 5668 3134108 ~ 3146480 (-)
AMCG00002095 NA coding upstream 18164 3146604 ~ 3147047 (-)
AMCG00002096 NA coding upstream 145983 3274423 ~ 3274918 (-)
AMCG00002104 NA coding upstream 367719 3496159 ~ 3498806 (-)
AMCG00002102 NA coding upstream 374606 3503046 ~ 3510980 (-)
G120789 NA non-coding downstream 20543 3091776 ~ 3092899 (-)
G120760 NA non-coding downstream 70942 3040548 ~ 3042500 (-)
G120754 NA non-coding downstream 93286 3008901 ~ 3020156 (-)
G120746 NA non-coding downstream 126663 2985573 ~ 2986779 (-)
G120743 NA non-coding downstream 159960 2953273 ~ 2953482 (-)
G120841 NA non-coding upstream 364516 3492956 ~ 3494050 (-)
G120842 NA non-coding upstream 371841 3500281 ~ 3502928 (-)
G120849 NA non-coding upstream 407382 3535822 ~ 3536525 (-)
G120853 NA non-coding upstream 410322 3538762 ~ 3540826 (-)
G120914 NA non-coding upstream 572052 3700492 ~ 3704364 (-)
G120748 NA other downstream 108525 2995508 ~ 3004917 (-)
AMCG00002085 NA other downstream 182424 2921252 ~ 2931018 (-)
AMCG00002078 NA other downstream 265505 2845382 ~ 2847937 (-)
AMCG00002044 NA other downstream 1622875 1486551 ~ 1490567 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other upstream 45065 3173505 ~ 3186353 (-)
AMCG00002097 NA other upstream 279045 3407485 ~ 3466461 (-)
G120907 NA other upstream 585427 3713867 ~ 3716252 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other upstream 655796 3784236 ~ 3786544 (-)
G120993 NA other upstream 1086275 4214715 ~ 4219877 (-)

Expression


Co-expression Network