AMCG00002097


Basic Information

Item Value
gene id AMCG00002097
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3407485 ~ 3466461 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002097
ATGGGAGACGACACTTTGGGATGGATTTGGGAGCTGACTGACACGAAACTGAGCTGCCCCTCACCCCCGTCATCACTCCACCGATATCGCATTCGTGTCCGAGCCGTGGCCCTCGCGTCTAAGAATGCTTCGTACCGAGCGCTCAAGTACCAGTACAGGCTTATCTATTGGAAGGGGTTGCCCTATGAATTGCCAGTGAAATCCAGTGGCAGCAGATCATTGGCGTCTGTCCCAGCCTCGTGCCGCGATCACACCCTGGTCCCGGAGAGAGACAATCTTGTAGGGATTATGGGGCTGAACGTGCGGCTGCTTAAGAGGCGAGAGGAGGCCTTGATGCAAACGGTTATCGATAACCCCGatgatCATGGAAACAGTAATGGCAGTCATGTGAAAATATTCCTACCCAAAAAGCTGCTCGAATGTCTACCAAAATGTTCCTCGCTGCCGAAAGAGAGACACCGGTGGAACACCAATGAGGTTTGGTATGCTGGGGAGCCTGCAGTGATCTGTAGTGTCCTAGAGAACTGCAGAACAACAGAACCGCACGGCCTGAATCCCACGCAGCCGATTCCTTCTCGGAGTCTCTCTTCCTGCTACCCCTCGCTTAACTCTGGTGTGACACGATACACCACGAGACTGCCCACCCGTCCCCACCAGATTCGTCCGCTTCAAGATGCACCTAACGGTGTAGACGGGGCTTTGGTGCAACCGAAAGATGAAAGTCTCGGCGGCCCCCTCTCCCCCGACCTTCGCCTTTTCTCATCTGGAGCCGCGGCCCGGGCCTCCGAAACGATGTCGCTTCTGATTTTTCACCGCCGGAACCGGGCGTCCTCGGCTGGAAGGTGGGCTGTGGAGTGTGAAAATGTCAATAGCTTTTCTCATCCCCTGTGCGGCCTGGGAGATGAGTCTCGTCGAGGATAA
>TU151407
gatgtggCGCGCGGAGGGGAAATGGCCGCCGAAAACAAGCCGGAAGatgatCATGGAAACAGTAATGGCAGTCATGTGAAAATATTCCTACCCAAAAAGCTGCTCGAATGTCTACCAAAATGTTCCTCGCTGCCGAAAGAGAGACACCGGTGGAACACCAATGAGACTCTTGTGTCCAGCTGCCATATTGGATTTCTTGTTAATATTGAGCTTGACCCATGACCCCTGACCTCCTGCATACTCTTGgtaaccatttcatttttttttttaatttcattgcattttagttatattatttgtttattgatgattattttatctgaccatttcataaatgcattttcttatttagtTAATTCAACCTTTGTCTTTTGACTTCATTTCCCCTTAAGTTTCCTTGTAATACTTAAAAGTAGATGTAGTTTTAAATCTGTtgatacatgtttaattattttgtgttttctcttccttCGTTTGTTTCTAACTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002097 True 921 mRNA 0.55 6 3439045 3451247
TU151407 False 489 lncRNA 0.36 3 3407485 3466461

Neighbor

gene id symbol gene type direction distance location
AMCG00002096 NA coding downstream 132567 3274423 ~ 3274918 (-)
AMCG00002095 NA coding downstream 260438 3146604 ~ 3147047 (-)
AMCG00002093 LOC106567259 coding downstream 261005 3134108 ~ 3146480 (-)
AMCG00002092 NA coding downstream 296577 3095720 ~ 3110908 (-)
AMCG00002090 NA coding downstream 317601 3087544 ~ 3089884 (-)
AMCG00002104 NA coding upstream 29698 3496159 ~ 3498806 (-)
AMCG00002102 NA coding upstream 36585 3503046 ~ 3510980 (-)
AMCG00002103 NA coding upstream 60891 3527352 ~ 3533819 (-)
AMCG00002108 NA coding upstream 174721 3641182 ~ 3661770 (-)
AMCG00002113 NA coding upstream 301694 3768155 ~ 3777213 (-)
G120789 NA non-coding downstream 314586 3091776 ~ 3092899 (-)
G120760 NA non-coding downstream 364985 3040548 ~ 3042500 (-)
G120754 NA non-coding downstream 387329 3008901 ~ 3020156 (-)
G120746 NA non-coding downstream 420706 2985573 ~ 2986779 (-)
G120743 NA non-coding downstream 454003 2953273 ~ 2953482 (-)
G120841 NA non-coding upstream 26495 3492956 ~ 3494050 (-)
G120842 NA non-coding upstream 33820 3500281 ~ 3502928 (-)
G120849 NA non-coding upstream 69361 3535822 ~ 3536525 (-)
G120853 NA non-coding upstream 72301 3538762 ~ 3540826 (-)
G120914 NA non-coding upstream 234031 3700492 ~ 3704364 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 221132 3173505 ~ 3186353 (-)
AMCG00002094 vamp3,LOC107582408 other downstream 279045 3113442 ~ 3128440 (-)
G120748 NA other downstream 402568 2995508 ~ 3004917 (-)
AMCG00002085 NA other downstream 476467 2921252 ~ 2931018 (-)
AMCG00002078 NA other downstream 559548 2845382 ~ 2847937 (-)
G120907 NA other upstream 247406 3713867 ~ 3716252 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other upstream 317775 3784236 ~ 3786544 (-)
G120993 NA other upstream 748254 4214715 ~ 4219877 (-)
AMCG00002167 NA other upstream 2509264 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 4360180 7826641 ~ 7839411 (-)

Expression


Co-expression Network