AMCG00002101 (klhl21)


Basic Information

Item Value
gene id AMCG00002101
gene name klhl21
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3519315 ~ 3523845 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002101
ATGGAGAAGCCCGTGGTGCAGACGCAGGCCTCCACGCTGCCTTTCTTCGACTCCTCCCATGCCCTCAACCTGCTCCGCGGCATCCACGAGCTGCGCGCCGAGTGCAAGTTCTTCGACGTGACGCTGTGCGCAGAGGGCCGTGAGTTCGCCTGCCACCGCACCGTCCTGGCCGCCGCCAGCAACTACTTCAAGGCCATGTTCGCCGGCACACTGCGCGAGAGCGCCATGGACCGCGTGGAGCTGCACGAGGTGTCGGCCGAGCTGCTGGGGCTGCTGGTGGACTTCTGCTACACGGGCCGCGTCACCGTCACACAGGACAACGTGGACCTGCTGCTCAAGACCGCCGACCTCTTCCAGTTCCCCTCGGTGAAGGAGGCCTGCTGCGCCTTCCTGGAGCAGCGGCTGGACGTGTCCAACTGCCTGGAGATCCAGGACTTCGCCGAGGCCTACGCCTGCCGCGGCCTGGCCGAGAGCGCGCGCCTCTTTGTGCTCAAGAACATTGTGGAGCTGGCCAAGGGCAAGGACTTCGAGCGGCTGCCCTGGAAGCGGCTGCTGGAGTTCGTGTCGGACGACGGGCTCTGCGTGGACAAGGAGGAGACGGCCTACCAGATCGCCGCACGGTGGGTGAAGGCCAGCCCCCAGCGCCGGCTGCACTACTGGCCTGAGCTGCTGCAGCAGGTGCGGCTGCCCTTTGTGCGCCGCTTCTACCTGCTGGCCCACGTGGAGAGCGACCCCCTTGTGTACCTGTCCCCGCCCTGCCTGCGCCTGGTCAGCGAGGCGCGCGCCTTCCAGTCTTGCGAGTACGACCGGCACGACCAGCCCTGCCACCGCATGCGGCCGCGCCCCTCCACCGGCCTTGCCGAGATCCTGGTGGTGGTGGGCGGCTGCGACCAGGACTGCGACGAGCTGGTGACCGTGGACTGCTACAACCCCCAGACCGGACAGTGGCGCTACCTGGCCGAGTTCCCCGACCACCTGGGTGGCGGCTACAGCATCGCCGCGCTGGGCAACGACATGTACGTCACAGGGGGATCTGACGGCTCTCGGCTCTACGATGGTGTGTGGCGCTACAACTCGAGCGTGAACGAGTGGACGGAGGTGTCGCCCATGCTGAAGCCGCGCGAGTACCACAGCTCCGTGGTGCTGAAGGGCCAGCTGTACGTGGTAGCGTCCGACAGCACCGAGCGCTACGACCACGCGCTGGACTGCTGGGAGGGGCTGCGGCCCATGCTGCACCCCATGGACAACTGCTCCACCACCACCTGCCGGGGCCGCCTCTACGCCATCGGCTCGCTGGCCGGCCAGGAGACCATGGTCATTCAGAGCTACGACCCCGACACCGACCGCTGGGCCCTGGTCAATTGCGGACAGCTGCCGCCCTGGTCCTTCGCCCCCAAGACGGTCACGCTCAATGGACTCATCTACTTCATCAGGGACGACTCGGCGGAGGTCGACGTCTACAACCCCCAGAAGAACGAGTGGGACAAGATCCCCCCGATGACTCAGGTACCCATAAGTCCCTTCTGCATCACAGCCCTGTCCAGAGTGGTTTACTCGGTCCACGTCGGCGGCAGCGTGACCCCCCTGGGCGGGCGCATCTTCGTGTCGGGGGGCTACGACAACACCTTCGAGCTGTCGGACGTGGTGGAGGCCTACGACCCGACCACCCGCACCTGGAGCCACGCGGGCCGCCTGCCCCAGCCCACCTTCTGGCATGGCAGCGTCAGCATCTTCCGCCAGTTCATGCCCCTGGTGCCCAGCGTGTTCGAGCCGGCGCTGGACAACGCCGAGGTCAACGCCATCCAGCTGCACCGGCACCACTACCGCACCCAGGCCCTGCAgaaccacaacaacaaccagAACCTCAACCAGGCCCACTGA

Function

symbol description
klhl21 Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in chromosome passenger complex localization to spindle midzone; protein ubiquitination; and regulation of cytokinesis. Predicted to act upstream of or within cell division. Predicted to be located in polar microtubule. Predicted to be part of Cul3-RING ubiquitin ligase complex. Orthologous to human KLHL21 (kelch like family member 21).

NR:

description
PREDICTED: kelch-like protein 21

GO: NA

KEGG:

id description
K10458 KLHL21; kelch-like protein 21

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002101 True 1881 mRNA 0.67 4 3519315 3523845

Neighbor

gene id symbol gene type direction distance location
AMCG00002100 NA coding upstream 29682 3479844 ~ 3489633 (+)
AMCG00002086 NA coding upstream 432022 3085012 ~ 3087293 (+)
AMCG00002087 NA coding upstream 479292 3025064 ~ 3040023 (+)
AMCG00002088 ybx1,LOC100194660,LOC107733967 coding upstream 514597 2995378 ~ 3004718 (+)
AMCG00002082 NA coding upstream 532536 2967365 ~ 2986779 (+)
AMCG00002099 NA coding downstream 37773 3561618 ~ 3562267 (+)
AMCG00002107 NA coding downstream 65522 3589367 ~ 3594982 (+)
AMCG00002106 NA coding downstream 83040 3606885 ~ 3618192 (+)
AMCG00002105 NA coding downstream 104606 3628451 ~ 3642159 (+)
AMCG00002112 NA coding downstream 184347 3708192 ~ 3710721 (+)
G120827 NA non-coding upstream 16388 3500337 ~ 3502927 (+)
G120823 NA non-coding upstream 25248 3491280 ~ 3494067 (+)
G120794 NA non-coding upstream 402891 3113450 ~ 3116424 (+)
G120779 NA non-coding upstream 418269 3100278 ~ 3101046 (+)
G120778 NA non-coding upstream 419173 3099607 ~ 3100142 (+)
G120928 NA non-coding downstream 264871 3788716 ~ 3791941 (+)
G120961 NA non-coding downstream 416611 3940456 ~ 3940716 (+)
G120974 NA non-coding downstream 563314 4087159 ~ 4087472 (+)
G121044 NA non-coding downstream 1057009 4580854 ~ 4581879 (+)
G121045 NA non-coding downstream 1058128 4581973 ~ 4582280 (+)
G120742 NA other upstream 559840 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 665188 2852154 ~ 2854127 (+)
G120518 NA other upstream 1578499 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 2526551 682670 ~ 992764 (+)
AMCG00002098 NA other downstream 9969 3533814 ~ 3542177 (+)
AMCG00002152 NA other downstream 1694985 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 3062809 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 3869955 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 5214926 8738771 ~ 8792478 (+)

Expression


Co-expression Network