AMCG00002103


Basic Information

Item Value
gene id AMCG00002103
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3527352 ~ 3533819 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002103
ATGGCAGCCTGGTGTTTTGCAACGATTTCAGCTCGTCCGTCCCGTCAGCAGCTCCACGCCGCCGCGCTGCAGCACCGCCGGCACGTCATATCCGGCGCCTGTTTCAACATGGCTTCTTGCACGCAGAGGGTGCAGGGCAGCTTCTGCGACGCCAGCCTGAGCGCGGAGGACGGGGGGGTGTTCCGGGCGCACCGCAGCGTGCTGGCCTGCTTCAGCCAGCTGTTCCGCGACTCCTACGCTGCCACCCCGTTCGTGGACGTGCGCCTGCCCGAGGGCTGCCCCTCCGAGGGACTGGGCCTGCTGCTGGACTTCATCTACACGGGGGAGCTGAAGCTGAGCTCGGGGACACTGGACAAGGTGCGCAGTGCGGCCCTCAGCCTGTCCGTGCCTGACGCCCTCAGCCTCTGCCAGGAGTTTGGCCAGGGGGACCCGCCCGAAGCCCCCCTACAGGCAGAACCCAGCGCAGCAGACAGTGAGTGCCAGGGATCCCCGCGGGGGGCCCCCGAGGAACAGGAAGGCACCGGCGCAGCTCAGCCATCGGGGACGGCGAAACCCAAACCCAGACAGTCGGCCAAGATGAAATCCAAAGCGGTCAATACCACACCAAGGCCGGTTGCCCCCTGCCCAGCCACAGATGCCACCACAACCACACGCTCGGGACGCAGAGTCAAGGGCCCCAGCCGCCTGCTCAGGGACAGCCCCCCGCCCACGTCTCCCCGGATCCCCCCACGCCGGGCCGAGCCAGCAGCTAAGGAAGAGGGAAAGGGGGCGTCTGTGGCAGCCGATGTGGAGAGCGCCGAGCCCCCCGCCGTGGGCACAGAGAGGCAGGGACGAGAGACTAACTGCATCCTGCGGCACATCTCATTCAATTACAGAGAGCCGGAGGATGTGAAACTGCCGGCACAGGGTTTGATTTCCCccacttttttccccttgcaGGACGGGAGGGGAGTGGAGGCCGGCCGCGACGTGGACCACGAGGAAGAAGAGGCTGGGGAGGGCGAGGTGGGGCGCGAGGACACCGACGAAGACTACCTCCCCCCCACGCCTCCCGCCACCGCGGCCAACCCCCGGAGCAGGTACAGGGGCCGGGCGCGGGGAGCCGTCAACAAGGAGAATGGGGAGAGGCCCCGGAGGGATGCCAGGAGGGGCTCCGTTCAGTGCCCGACCTGCCACAAGACCTTCCTCAGCAAGTACTACCTCAAGGTGTTCTCGTGCTCTCAGTGCACATTGACTTTCCGCCGGCGGTTGGAGCTGCGTCTGCACATGGTCAGCCACACCGGAGAAATGCCCAACAAGTGCACCTCGTGTCCAGAGCAGTTCATGCAGAAGAAGGACTTGAAGAGCCACCTAATCAAGGTTCACGGCGCGCCCAAACCCCACGCGTGCTCGCTGTGTCCCAAGTGCTTCCTGTCCCGCACCGAGCTGCGACTGCACGAGGCCTCCAAGCACCGTGGGGAGAAGCTGTTCGTGTGCGAGGAGTGCGGACACCGCGCCTCCAGCCGCAACGGCCTGCAGATGCACATCAAGGCCATCCACCGCCTCGACAAGCACCACCGCACACACACGGGCGAGCGGCCGTTCCGCTGTGAATTCTGCGAGCAGCGCTTCACGGAGAAGGGGCCTCTGCTGAGACACGTGGCCAGCAAGCACCAGGAGGGCCGGCCGCACTACTGCCACATCTGCAGCAAGACCTTCAAAGCCATCGAGCAGCTGCGGGTCCATGTGCGCCGACACAAGGGGATGAGGAAGTTTGAGTGCTCCGAGTGCGGCTACAAGTTCACCAGACAGgCCCACCTGCGGCGGCACTCCCAGATACACAACCGGGTGGAGAACTACAACCCTCGGCAGAGGAGGCTGCGCAACCTGGTGGTGGAGGACGAGAAGGCCGAGGTGGAGGCGGGGGCGGTCCTGCCCGGCGAGGAGGCGGTGGAGGGCGAGGGCACGCTGCCCGGCGACATCATCAGCGTCATGATCCCGTCCGGCACCAtcgtggtggaggaggtggtcTCCACGCAGGGGTGCGGCACCAGGGGGGACGAGCCCGGCTTCACGGTGGCCGACGTCATGGAGCAGACCCTGCTGGTGACCGGGGCGTACCCGCTGCACCACGCCGCGGTCGTCACCGAGGAgctggtggagggggggggcacAGTGGATAAGGCCTGA

Function

GO: NA

KEGG:

id description
K10519 ZBTB48, HKR3; zinc finger and BTB domain-containing protein 48

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002103 True 2169 mRNA 0.66 9 3527352 3533819

Neighbor

gene id symbol gene type direction distance location
AMCG00002102 NA coding downstream 16372 3503046 ~ 3510980 (-)
AMCG00002104 NA coding downstream 28546 3496159 ~ 3498806 (-)
AMCG00002096 NA coding downstream 252434 3274423 ~ 3274918 (-)
AMCG00002095 NA coding downstream 380305 3146604 ~ 3147047 (-)
AMCG00002093 LOC106567259 coding downstream 380872 3134108 ~ 3146480 (-)
AMCG00002108 NA coding upstream 107363 3641182 ~ 3661770 (-)
AMCG00002113 NA coding upstream 234336 3768155 ~ 3777213 (-)
AMCG00002116 NA coding upstream 255239 3789058 ~ 3794546 (-)
AMCG00002118 NA coding upstream 284003 3817822 ~ 3824170 (-)
AMCG00002117 NA coding upstream 292357 3826176 ~ 3834827 (-)
G120842 NA non-coding downstream 24424 3500281 ~ 3502928 (-)
G120841 NA non-coding downstream 33302 3492956 ~ 3494050 (-)
G120789 NA non-coding downstream 434453 3091776 ~ 3092899 (-)
G120760 NA non-coding downstream 484852 3040548 ~ 3042500 (-)
G120754 NA non-coding downstream 507196 3008901 ~ 3020156 (-)
G120849 NA non-coding upstream 2003 3535822 ~ 3536525 (-)
G120853 NA non-coding upstream 4943 3538762 ~ 3540826 (-)
G120914 NA non-coding upstream 166673 3700492 ~ 3704364 (-)
G120975 NA non-coding upstream 553289 4087108 ~ 4087418 (-)
G121039 NA non-coding upstream 1033620 4567439 ~ 4569294 (-)
AMCG00002097 NA other downstream 60891 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 340999 3173505 ~ 3186353 (-)
AMCG00002094 vamp3,LOC107582408 other downstream 398912 3113442 ~ 3128440 (-)
G120748 NA other downstream 522435 2995508 ~ 3004917 (-)
AMCG00002085 NA other downstream 596334 2921252 ~ 2931018 (-)
G120907 NA other upstream 180048 3713867 ~ 3716252 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other upstream 250417 3784236 ~ 3786544 (-)
G120993 NA other upstream 680896 4214715 ~ 4219877 (-)
AMCG00002167 NA other upstream 2441906 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 4292822 7826641 ~ 7839411 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location