AMCG00002105


Basic Information

Item Value
gene id AMCG00002105
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3628451 ~ 3642159 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002105
CCAGCACAGAGCCTTGCCTAGCACATGCATTGCTGGCTGCCGGGAAACACATCCACAGACttattgttattgattaattagtattactatttattaacTCATCACTACTCAGATCTCAACCTCGACAGACCTATTTATTGTTGCCTTTGTCTCTTTTTTATCAGTCCTGATTCATGACATTTCAGATGGTGGGAAACTGACTCTAGCCAGTTAGTTTCAAGTCGTGAAGAGCCTAAAGGATGAATTTCTCTGTGTGGATGCTGTTGTGGATGGTGCCCCTGACCCTGGCGTCGCACTCCTGGCCCGAGAGCAGTTCTCCCAGCGCAGCGACTGGCACGCAGTCCCGGAGCGCCACCCTCATGCCACCCCTAGGCGCCAGAAGAGAGAAGGGGGTGGCCGGCCACAGTGAGGGGGACGTGCAGTTTCGCCGTTTTCGGAGGAGCCTCACATGCCCGGACAGTCATTATTATGACAGCAGCGTAAATTGCTGCTGCAAATGGTGTCCCGCAGGCACTTTCAAAAACGCCTCCTGCTCGGACACCCAGGACACCGTCTGTTCTCCCTGCCCCGCTGGGACCTTCTTAAAAGAATCCAACTACTTGAGACAGTGTCAAAGGTGCAAGTCATGTGATCCAAATACGCAGAGGGAAGGGAAGACGTGCGAAGCCCACTCGGATGTGGAGTGTGAATGTTTCCAAGACACAAACACTCAGTGTGGCCCCTGCAGACGGGGGTTTTATGAGGACGGGGACACCTGCCAGCCCTGTCTCGAGCAGGACTGTGGAAAGCAGGGGAGAGACGCCTGTCAGTCAGACTGTCCTACTCCGACCGCCCCTCCAGGGCACAGGAACCAGAACTCCGTCGTCCTCTTCAGCCTGCTGGCGATACTGCTGATCGTGGGGGTGGTGGCTCTCTGCCTCCGCCTGTTCAACACCATGGGAGCGGCCCGGCACATACCCCTCACCAGTAAGAGGCCGCAACCCCACACTCACCCACTGTGTCCCCCTCCCCACGAGCCCAAAGTGCCGCTGATGGTGTCCCCCTTGACTGGAGTCACCACTGAGTGCCAAAAGGACAAGCCACTGACGGAGCCCTTCCCGCCCAGCCCCGACAGTCACGAGACAAGTCTGATAGGCCCCCTGTCGGATGATCAAGCCCCCAAACcgCTGAGAGAGGAGCCCCCGGCCGAGGCCTGGCTGCCCGCCGTGCTGTACGCCATCATCAGCGAGGTGCCCGTGCGGCGCTGGAAGGAGTTCATGCGCTCGCTGTCGCTACCCGACGCGGAGATGGAGCGCGTGGAGCTGGAGGCCGGGCCCAGCTACCGGGAGCGGCAGTACCAGATGCTGCGGCTGTGGAGCCAGAGATCGGCCACCGACCTGCAGAATGTGTACAGCGCGCTGCACGCCATGGACCTGCCGGGCTGCGCTCAGGGCCTGCAGGAGAAACTGGCTCTCCTGCAGCCCCCCAACGTATCCTAGCCACGGCGGCAGGGCAATCGTGGACCCGTCTCCGAGTCCTGCTCGATGATTTGGGAATACTGCGAAGCTCTTCAAACTTTCCTGTCTTCAGATGTCTCCCTACCTTTGAAGGACACGGTGCTTTTTGGGGGACACAGGATAAGAATCCCGCAGGGTCAGGAATGCAGGACGGAAACACAGGATGGAACCAGCctgaacaaacaacaacaacaaaacaatcaaaaggaTCATCAAAAATACACGTAAGGAGGAACACAGGACAAGTAAGCGAGGGAAATAtcacaggtttgttttttgtgcgtTGTTGCTGCCTGCCTGTGTCATCAAAACAACAGTAACTTGTGGGGTCAGTTGTTACAGGTTTACTACCATAATACATGGACCAGAGCAATATCACATCTCCTGAGTTTAACCTCAAGCAGTAGCTTCACCTAGACCAGCAATGGGAAGCGTCGTTTGTGCTGCTGGCTCTTGGTAATAGTTTTACAATCGTTTATTAATGCTTAATCCACTTTACACTTATCTGGTGCTCTACATACATTCCCTTCAAGccaagagagtgtgtgtgtgtggggggtgagCGCCCTTTTGTGGCTTGTTATGTCCCAGCTAACCAAATAATGTGTTAACATCATAATGAAGTCAGCCTACACCGATATGATGTCATACCAACACAAATTTCCAACTTTACTGTACGTGCAAAATCATACTACTGCGTGTGACAACAGTAATCAGACAACATTGATGACACCATGTGGTCAGAACCGAACTACAGCCTCACGCACCGTGGCCTGCGTGTCAGGGAGGAGTCCACTGTGATGCTGATTTTCATCTCGGGTGGCATGAGGATTAGACACGAGATGTTTTCACGGTTGTTGTTCTTGAGGTAAAGGGTGGAACGATGCTACTACACACAAGCTGAATGCTGGACTGACTGCCATCATACTTAATTGTTTTACTGTAGTGTACTTGATTTGTACtgtaatatgtattgtttatttataattttgttaatcCTCAGTCCATGGTAGGTCTTTGGTTTCACAGAAAATTGTCACCATCATCACACTTGCCAAGTCTTCAACGTTGAGCCTGTCAGAAGGCAAGTGGCAGCtgcacatttcctgcacactaaAATCATCCCTCTGTGAGGTTTCCCACAAACccgtctctctcacacacacacgaagtacaaacacacagaagtgcaaacactctctctctctcacacacacgcaaacaaccacagagagatttaaaagaaaataaaaagctgacCAACTTTGTCTGAACAAAAACAGTCACATCGACTCGGCACCAACTTCCTGTTCAGGGTAACGAAAGAGATGCTCATCTTGTGAAGACGTGCTGAACTGCTGTGTGTTCAAAACAAATCGATGGCAACGGTATCATTGAGCTGGAAATCAATGAGTCAGTGTTCCTATCAAGACATCAAAGAGAAACACCACGGACAAACCAAGAGCAACAGACGGTGACACAGAACACGCCAAACACACGGCCGCTTCAGTGTCTGCGCTCTGTGGAAGATTCACAATGCATTATTACACGCACCCCTGCTGTTTGTGCCAGCGATCACTTTGAATGTTTAGAAcccagtttttatatatatgcgcatatatatatatatataaatataaagtgaatattgtatttattctaatGTGTATGTACTGTGTAACACAGAAATCTGTAGACAATGATTGATGTCTTATTTTATAGCTGTATAAGTGGTTTTCTTTCTGTTACTGATAATGACACTTCATTTTATGGAGGATTTTAAAAGAAGTGAGTGAATTACAAAGCGCCTCGATTGCATACAATGGGTGTACCGAACATCTGAATAACTGTGGCCTGCAGTGATGAAATAAAGGCACATCtcctattaaattaaataactgttaGTTCTCATATTTAACAGAACCTACTGTTCCGAATAGTTGAGATTTGGTATACATGTGTCATGTAAACGGAGCCTAATGATTGACTgtgaatggaaaagaaaaagaaaacaggtaTTGTGGTATTTGA

Function

GO: NA

KEGG:

id description
K03158 TNFRSF1A, TNFR1, CD120a; tumor necrosis factor receptor superfamily member 1A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002105 True 3527 mRNA 0.49 10 3628451 3642159

Neighbor

gene id symbol gene type direction distance location
AMCG00002106 NA coding upstream 10259 3606885 ~ 3618192 (+)
AMCG00002107 NA coding upstream 33469 3589367 ~ 3594982 (+)
AMCG00002099 NA coding upstream 66184 3561618 ~ 3562267 (+)
AMCG00002101 klhl21 coding upstream 104606 3519315 ~ 3523845 (+)
AMCG00002100 NA coding upstream 138818 3479844 ~ 3489633 (+)
AMCG00002112 NA coding downstream 66033 3708192 ~ 3710721 (+)
AMCG00002110 NA coding downstream 75838 3717997 ~ 3730830 (+)
AMCG00002111 NA coding downstream 102689 3744848 ~ 3761328 (+)
AMCG00002109 slc45a1 coding downstream 137138 3779297 ~ 3786544 (+)
AMCG00002115 NA coding downstream 155096 3797255 ~ 3815714 (+)
G120827 NA non-coding upstream 125524 3500337 ~ 3502927 (+)
G120823 NA non-coding upstream 134384 3491280 ~ 3494067 (+)
G120794 NA non-coding upstream 512027 3113450 ~ 3116424 (+)
G120779 NA non-coding upstream 527405 3100278 ~ 3101046 (+)
G120778 NA non-coding upstream 528309 3099607 ~ 3100142 (+)
G120928 NA non-coding downstream 146557 3788716 ~ 3791941 (+)
G120961 NA non-coding downstream 298297 3940456 ~ 3940716 (+)
G120974 NA non-coding downstream 445000 4087159 ~ 4087472 (+)
G121044 NA non-coding downstream 938695 4580854 ~ 4581879 (+)
G121045 NA non-coding downstream 939814 4581973 ~ 4582280 (+)
AMCG00002098 NA other upstream 86274 3533814 ~ 3542177 (+)
G120742 NA other upstream 668976 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 774324 2852154 ~ 2854127 (+)
G120518 NA other upstream 1687635 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 2635687 682670 ~ 992764 (+)
AMCG00002152 NA other downstream 1576671 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 2944495 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 3751641 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 5096612 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 6202046 9844205 ~ 9851312 (+)

Expression


Co-expression Network