AMCG00002108


Basic Information

Item Value
gene id AMCG00002108
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3641182 ~ 3661770 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002108
CGGGGTGAGCAGCTGCACTGCTGTCTCTGTGCGGACGAGAGACGAGAGACgagcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgcggAGGAGCAGCTCGCCGCCTGTGCGCAGCCTCGGCCCGTGTGTGGAAACAGCGCCGCCGCTCACCGGACGGACCCGGCGCGGAGACTCGCCCGCCCGGCCGCGCTATGACCGCCGTGTCCCGGGCAGCCCTGGCGCTGCTGCTCTCCGCCGCGCTGCTGGCGCTCAGCAAGGGTTACACGGTGCCCTACGTGCCTGACTCTGAGGAGAACTGCAAGGATGGCGAAACCGAGTACTTCAACAAGGAAGCCCAGCACTGCTGCAGCAAATGTCCGCCAGggacacatttaaaacaacaatgcagTGCATCCAGAGACACGGTCTGTGAACCCTGTCGAGAGGGCACCTACACGGACCGCTGGCACTACCACTGGAACTGCCTGAGATGTGAGAAAAAATGCACCGCGCTAGGCCTGGTGGAGGTCCAGACCTGCATGACCACATCCAACAGAAAGTGTGTGTGCCCGGTGAACACCTACTGTTCTTTGAGGTTCGGTCTCAACAAGTCCTGTGAAAactgcagtcctttctccatCTGCCCAGCCGCCCACGGTGTCTTGGTGAATGCGAATGAAGACTCTGATGTCAAGTGCGCGCCCTGCCCCACCGGGACCTTTTCTGCTACGCCGTCCAGCACCGAAGCCTGTCAGCCCCACACTGACTGCGCCTCTCTGGGAAAGCGAGCACTGACCCCGGGCAATGCCACCGCTGACGCAGAGTGTGGGGACTGGGTCAGAGTGATGCCCGACACCGCCACCCTGAGTGGACATCCAGCCCGAATCACGACGCCCCCTAGCCCCGCCGGGTCCTCCAGCGCTCAGCCTGACGACGTGCTCCCGGTCGCAGTGTGCCCCGAGGTTGCGGGCCTGACATCGCCGTCGTGTGTCAAGAAGCACATCCCTAAAATCATCGCAGGGGCAGCGTGTCTCCTGGCCGTGTTGGCAATCGTCATCTTCGCCTGCATCCTCGTCAAGCGGCACAAAGCTCGCCAGAACCGGGGTTCCGATGCAGAGGAGTTCCAGGATCTCAAGCTCCCCCCCGAGCTCCTCCAGCAGAACCCCTCTTATGTCCATCCCCCCAATCCAGAGCAGCAGTGCCTCCTGGGAGAGAAAGACTCCAGCAGTCCGTCCCTGTCCTGCGCCTCCTCCCAGTCGGATTCCAGCTACAGCTCGGGAGTGGGGTCCATACAGCAAAACGGCCAGGAGGGCCTGTCCCTCTGCAAGAGCCCAGAGACCCCGTCCACCACCAGCCCTCAAATGCAGGTGAGCATCGAGGCCACCATCAAATACCACCTGCAGACAGCGGGGTCCTGCTGCGCACCGCCGGCGTCCGGGGGGGGCGGCCGCAATCCCGACACGCAGAGCTCCGACTCTGGCGTCCCCCTCTCCCAGGAGGAGACCTACATCAACTTGCAGCCGTCCCAGTGCGAGGAGGACAAAGACGCCCGTCTGTCCGAACAGGAGAGCAAGGTGTGCTGAAGGGGCCGGGCCGAGCCAGGACAGCGCCAGCGCATAACACCCGCAGAGCGAGGCTGGAGCACGTCAGCTGCACTCGGGACACCTGGGAGATGCACCTCGTGTGGGATTAGTGAGGGTCACTGTGGCACGCTCACTCGTGCTCTCTTTGCTGTTcttaatatatatctatatattaattttgaattctGCCATCTATGGGCACCGTAACCCCAGATTTTCAGGGGCTGCCAGCCAGGAGGCCGATGGGTGACGAATGGTATTTAAAACCCCGCTTGTGTCCCAGTTGAATGCTGAGGTCACCATGGCCCCTGTTGCCATGACCCTTCACTGCCAGGCACCCAATGTTTAGAGGGCCTCGTTCAGGGCCACCCCTCTTCCGTGACACAGCGTAGAGGAGAGTGAGGGAATGCAGTGCATCAGCCCTGGGGAGCAAGAGAGAACGCCTGACTATACTTTTGTCTTCCCCACGCCTGCCTCTTCCCCCGTCTGTCGAAGGCCGGGCCCTCTGGTGCATGACTGTGGCCCTTCAGAGCGAGCACTCATAATGCTCTAGACTCTGGTTTCACTGTGCACAGTAACGCTGACTCACACTGAGATTTACATTCCTGTCCGGCGAGTTTTGGGAAACTATTTAAAGCCGGCAGACGCCCACACACAGCTCTCAGCGTCTCTTATTTCTTTACCTCCATTTCCAGGAACACggagagaaaaaagaacagaCTGGCCAAAAGGAACAGTGACAGAGAAGGAGTTTCTGGTGCAGCGACTGAGGCAGGGAAAGCACCGTGTGTTAACATGGTCTTTTTTTGCGAGCAACCATGATGATCGCTGATCGTTACACAGTGTGTCCTCTGTGCTCGGGTAGATGCTGGTTGTGAACGTGTTGTTTGACATTATCTCTCTGCTCAGGTATTTATGCACTGAACTGTGAGAAGGAAGGAGGAACTGTACGTATCGGAAATACACCCTCATCTCCCAGGAAGGCGGTCGCTGACATTTTCTTAGAAAGAGATGCACATATATGACTCGAGAGTTAGTCAGGGCCACAGAGGAGTCCGTCTGTTCAAGGAAACCAAGCTGGGTGTTaagaagcaagaaaaataagacaaaGCCCTTCTGTACTGCCTTTGACCAGTCatgactgtatttatttatacagggCCTTAATGAACTAAAAACAACACCGAGGTCAAACCGCAAAGACAAAACAACTTAAGCCAGTatgtacagacagacagtcacacacacacacatacgtttGGTTCCCAGACCAAATacttgttatttttctaattgaggagtttgttttatacttttgtaAATGACAACCACAGATATTTCAGAGAAGCTGAACTCTGTGTGCAAGTCTTCCCTTACAGTatatgtgttaatgtgtgtttatctgAAACATTATAATTACAGATCTGTCTTTACGTGTATAGAAACCCAGCTGTTCTTGATGAGCACATATTTGTGTAAAGAGTTTTGAAAAgcattgtatttctgtgtgtttgtcagcCGTTGTAGTCAAGAGTCCAAGACCTGTTTATGCAACAAGGACTCCCCCTAGTGTTCAGTGTAAAAATGACGAGCTGTTTTCACACTACAGCATCTGCTCCCGGGTTGAGTGGCCCCAGGGTGGCCCCTGGATGACCCTCCCCTGAATTCAGCCCTGTTTGCGTTCACATTGGCCAAGCGCTCTAATCACGGGTTACGATTCACTTGCTTTTAATTTCACCCCGAGGTGAAGCTTCATCCCGGGTTGGAAACATCAGCCTCGTCTCTACAGCGGCAGTTCACCGGCTTCAGGGTTTCGTCTCAGGTTGACAGTGCCAGTGTGAAAGCGCTTGATTTGGGACCCGGGTTCAACTGtctagtgtgaaagcagctcAAAGCAAAGCCCTGAAGACATGAGCTCTTCCAAACGCACGGCGAGATGGAtgttgtgtgtaaatgtttaaatagagGGACTGGTGTGCTGTCACTAGGACTGCGATTTTGTCTCAGAGATAATTGTGTTTACCTGcctgccttttaaaatattccccCCAACTTCTTCTTAATTAGACTCCCTTGAAAGCTAATAATTGGGCAGTACGTAACTCCGCAACACTGCAACTGTTTTTttactgattattattctgttGAATTGATTAATCAGTCACAGTGCAACACGTGTTCTACATTTCTAAAACGCACCTCCGTAGCACAAAATGCTTCAACGTATTTTGCTCATTCTGTCTACAGGGCAAATTTACCAAAAAAGGAAGAAACGGCATCAGCTACAGATGTTGTAAAACCCAATTATCTCCATGAAACAATGGCAGCACCAGCTCTGACCCACAGCAGCTGTATTGTGGTAATCACGTGTGTGATGCTGAATGTTAACTACGAATGTCGATGTCACTGTTGGCACAAATGAATGTAGACTGTGGTGCCAGTTCAATTATTGTTTCTGAGGGAAATAACATGTCGGCAGCAGTGCATCCTGATTGGCTGAGGGAGGCGTTTAATAAGGTGGCATTGTTCTGCACTATTTTGCTGTATTCTCATAAGGAATAGTAGTGAGAAATGAATCTGTATTTTACGCACTGCTGCCCATGCGTTCTGTCTGAGGCCTTTCATATTTGCAAGTTAAATTCTATATTGTCATAttgaaatcattttattatacaagttttattttcatactgcaTTAAAAGCACAAACATATCAAATACCACAAtacctgttttctttttcttttccattcacAGTCAATCATTAGGCTCCGTTTACATGACACATGTATACCAAATCTCAACTATTCGGAACAGTAGGTTCTGTTAAATATGAGAACtaacagttatttaatttaataggaGATGTGCCTTTATTTCATCACTGCAGGCCACAGTTATTCAGATGTTCGGTACACCCATTGTATGCAATCGAGGCGCTTTGTAATTCACTCACTTCTTTTAAAATCCTCCATAAAATGAAGTGTCATTATCAGTAACAGAAAGAAAACCACTTATACAGCTATAAAATAAGACATCAATCATTGTCTACAGATTTCTGTGTTACACAGTACATACACattagaataaatacaatattcactttatatttatatatatatatatatgcgcatatatataaaaactgggTTCTAAACATTCAAAGTGATCGCTGGCACAAACAGCAGGGGTGCGTGTAATAATGCATTGTGAATCTTCCACAGAGCGCAGACACTGAAGCGGCCGTGTGTTTGGCGTGTTCTGTGTCACCGTCTGTTGCTCTTGGTTTGTCCGTGGTGTTTCTCTTTGATGTCTTGATAGGAACACTGACTCATTGATTTCCAGCTCAATGATACCGTTGCCATCGATTTGTTTTGAACACACAGCAGTTCAGCACGTCTTCACAAGATGAGCATCTCTTTCGTTACCCTGAACAGGAAGTTGGTGCCGAGTCGATGTGACTGTTTTTGTTCAGACAAAGTTGgtcagctttttattttcttttaaatctctctgtggttgtttgcgtgtgtgtgagagagagagagtgtttgcacttctgtgtgtttgtacttcgtgtgtgtgtgagagagacggGTTTGTGGGAAACCTCACAGAGGGATGATTttagtgtgcaggaaatgtgcaGCTGCCACTTGCCTTCTGACAGGCTCAACGTTGAAGACTTGGC

Function

GO: NA

KEGG:

id description
K05141 TNFRSF1B, TNFR2, CD120b; tumor necrosis factor receptor superfamily member 1B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002108 True 5260 mRNA 0.50 10 3641182 3661770

Neighbor

gene id symbol gene type direction distance location
AMCG00002103 NA coding downstream 107363 3527352 ~ 3533819 (-)
AMCG00002102 NA coding downstream 130202 3503046 ~ 3510980 (-)
AMCG00002104 NA coding downstream 142376 3496159 ~ 3498806 (-)
AMCG00002096 NA coding downstream 366264 3274423 ~ 3274918 (-)
AMCG00002095 NA coding downstream 494135 3146604 ~ 3147047 (-)
AMCG00002113 NA coding upstream 106385 3768155 ~ 3777213 (-)
AMCG00002116 NA coding upstream 127288 3789058 ~ 3794546 (-)
AMCG00002118 NA coding upstream 156052 3817822 ~ 3824170 (-)
AMCG00002117 NA coding upstream 164406 3826176 ~ 3834827 (-)
AMCG00002121 NA coding upstream 249428 3911198 ~ 3918187 (-)
G120853 NA non-coding downstream 100356 3538762 ~ 3540826 (-)
G120849 NA non-coding downstream 104657 3535822 ~ 3536525 (-)
G120842 NA non-coding downstream 138254 3500281 ~ 3502928 (-)
G120841 NA non-coding downstream 147132 3492956 ~ 3494050 (-)
G120789 NA non-coding downstream 548283 3091776 ~ 3092899 (-)
G120914 NA non-coding upstream 38722 3700492 ~ 3704364 (-)
G120975 NA non-coding upstream 425338 4087108 ~ 4087418 (-)
G121039 NA non-coding upstream 905669 4567439 ~ 4569294 (-)
G121111 NA non-coding upstream 1054822 4716592 ~ 4722181 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding upstream 1448832 5110602 ~ 5116017 (-)
AMCG00002097 NA other downstream 174721 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 454829 3173505 ~ 3186353 (-)
AMCG00002094 vamp3,LOC107582408 other downstream 512742 3113442 ~ 3128440 (-)
G120748 NA other downstream 636265 2995508 ~ 3004917 (-)
AMCG00002085 NA other downstream 710164 2921252 ~ 2931018 (-)
G120907 NA other upstream 52097 3713867 ~ 3716252 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other upstream 122466 3784236 ~ 3786544 (-)
G120993 NA other upstream 552945 4214715 ~ 4219877 (-)
AMCG00002167 NA other upstream 2313955 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 4164871 7826641 ~ 7839411 (-)

Expression


Co-expression Network