AMCG00002110


Basic Information

Item Value
gene id AMCG00002110
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3717997 ~ 3730830 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002110
ATGCCTCTGCATAAAGTGGCAACTGAAGGTCGGAGACGCAGACCCTCTCCTGAGTTCTGGGCAGCAGCTGTTGCACCAGGACATGAGCTGAGCAGCGGCACGGATGAGGCCATGGCTGCCCACTCCTCAGAGCAGGGGGCCGGGGTGCCTGAGCTGTGCAGAGAGGGAGACAAGCTCCTGGGGGCCGGCGAGCTGGGGAGGGCCACCGCTGTGTACACCTCGGCGTTCAGGGCCCACGCCGGGGTGACCGTGTCGCACATGCGGAGGCTGGGTGTGCACAGGCTGACGGGGGTGATCTCCACTCTGGAAGCCTGGCTGGGCGGGTCGGGAGAAGCTCAGGATCTGGCAGAGGGGTCCGGCTTGAACAAAGGGCTGGCCGCGGTGTTCCTGTCCACGCTGAGCCCCAACAACCTCTCGGCGTCGCTCTTCAAGATGGAGTCTGTCCTGCAGGGCGCCGGACGGGGCTGCGAGGAGGTGGCGACGCGCTGCTCCGCTCTGCTGGAGGGGAAGCAAGAGCCGGAGGCGCACGGTTCTGCCCGCCTGGCCCTGCGGCTGACCCGTGCCCTCGCCTGCCTCCTCGCCCAGCCCCAGAGCCCCCACGGCTTAGAACTCTACTTGCAGGCTTTCCAGGAAGACCAGGCCGAGGCGGTGAGGCTGGTCAAGTGTAGGCAGGGGCAGCACTTGCCAAGAATCGTGGATGCCTTCTTGCAGCAGCTGTCCCTGCGCAGCCCCGACAACATCACCGAGACAGGGCAGGATGGAGGGCTGAAGGAGAGTGGGGTGTCAGCCGGGGTCGCTTCTGAATACCTTCATTTCTTGGTAGCCATCGCCCCCGATGACACACACGTGCAGGAGCTCCAGGCAGCGGCGCTGTTCCAGGCTGGCAGGTTTGAGGAGAGCGCCCAGGCTTACTCCCTGGCCCTCGGGGAGCGGGAGGCGCATACAGAGACGCTCACAGGGAGCGATAAGGCGGTCGCCCACTGGCTGCTGCCCGAGAGGAAGGCCGGTCTACTGGTGGGTCGAGCAGCTGCCCACTTCTCCGCAGGGGGCCGGGCGGTGGAGTCCTGCCGGGACCTGGGGGAGGCCTTCGGGACGCACCCCGCCGCTGCCCGGCTGCGCTTCCAGGAGATGTTCTCGGATCGAGGCGCCGGGGCCTCAGCGCGGGCCCAGCTCCGACAGCAGGCCGAGAGGGGGCTGTGCGGCTACAGGGAGGCCGTCCTGGGGCGTCCGGACCTGCGCTCGTCCCACGGGGTGGAGCTGCTGGACCCTGTGATCGCGGGGCTGCGGGCGCTGTGCCACCTGGAGCCAGGGGGGGGCGGCCGAGAGCTGCGCGTGCGGCTGGCCGACTGCCTGCTCCTTCGGGGGGAGTCCAAGGAGGCTCTGTCCATCTGCAGCCAGCTGGCCGCCGCCTCGCCGACCCAGCAGAGCTACCAGAACACAGTGCAGGTGCTGCGGGGCTTCGCGCGCCTCCTCTCGGATGACCAGCAGGGTGCGCTGGAGGACTTCCAGGCGGTGATCGAGCACAgcgccccccacccctcaaGCTGCGTGCGGGCGCTGTGTGGCAGGGGGCTGCTGCGCCTGCTGGGGGACGCCCACTACCTGGCCGCCCTGGACTACCTGACGGCGAGTCGGCTGCAGCCCCAGGAGGCGGCGCTCACCGTGCGCTGCCTGGTGCCCTGGAACCAGCGAGGGTTGCTGTGCACCGTGCTGCTGGAGCAGGGGAGGGCCATGCTGGAGGGTCCGGGGGGCCCCACCACCTCCCCACAGCAGCAGAGTGATCAGCTGGGCTCCAGACAGCTCGGGCACGACCGCTGCTCCTCGCCCAAGGAAGGGACCGCAGTGGGGGTGCACGCACTGGCGCTGCTGCTGATGGAGCTGGAGCCAGACTGCGACGCCCCGCGGATCCTGGCCGCCGATGCACTGTACCGGCTCGGGCGCGTGGAGGAGGCCTACCGCCTGCTACTGTCCACCGGGCCCTCGGCCCCCCGTGCGCCCGTCCTCGCCCGCCTCgccctgctgcagctgcacCGTGGCTTCCTCATCTTCAGCTGCCACTTCAGCGCCACAGCGAGGGAGGCTCAGGCCAGTGTTCGGTCTGAGGGGGCACTGTATCGACCTGCTCTGGGTCGGACACTGTTGAAGAAGCTGACCCAGTGTGGAGATACCAGCTGCCTGCTGCCCCTGCTGGCCGTGGCCGAGCCCACCGACCGGGCGCTGCTCCAGGAGAACTGCCACACCGCCGCCACGCGCGTCCTGGAGAGCCGGGGGGGCGAGGGCTGCGTCAGGGAGGCCGTGGCCTACCTCTCCATCGCCATCATCGCCTCAGGTGGCGTGGCCGTGGACTCCCTGATGGCCAGGGCCCGCTGCTACGCCCTCTTGGGCCAACGCAGGACGGCCATCTTTGACTTCTCAGCCATCCTCCGGGAGCACGCCGAGCACGTGGCGGCCCTGTGCGGCAGGGGCTTCACCTACCTCACGCTCCAGCAGCAGAAGGAGTGCACTCAGGACATCGTGGCGGCGCTGCAGGTGGACGCCGCGGCCGTCACCCAGGACGTGCTCTCCCTGAAGGAGGCCGCCAGGAAGCTCGTTTGTGATTGGCTGCACCAGCACTGCAGGGCCGGCCTCTCGGAGATCACGGCGGCCAATCCGGTGCCCTGTGGGGAGGAGCTACTGAGCGAGGCTTTCCTGATTGGAGGAGCCCTGATGAAGGTGGACAGCAGGAACCCCAGATGGCACATCTTGTATGTGGATACGCTGCTGGCCAAAGGGGCGATGAAGCCGGCCACCGCACATCTGCGCCAGGTCTTCGGCCAGGAGCCCCGGGAGGCGGAGCCCCGAGCCCGGTGGGGGCTGGTGGAGATGTGGCGGAGGAACCCGGCGGGGGCGGCCAGGGGGCTGAGCCAGATCGCCCAGACTGAGCCCTCCTCGCTCAACTTCCTGCTCTCGCTGCTCAGCCCTGCGCACCGAAAGCACCTGGCGCAGGCAGCAGCGCAGGAGGCGGGCAGTGTGTCGGAGCATGGCCAATGGGAGCCGGTGCTGGCTCTGCTGACCGTGGCGGTGCGGGCAGCGGGGGAGGGGAAGCCACGGTACCTGCGCCAGCGAGCTGCCTGCCTGGCGCGCCTGGGGCTCCACGAGCGCGCCGTGTCCGACCTGGACCGGGTCATCCAGAGCCACTCGGGCGTGGGGGAGGACCCCAGGGCGTGGGCCGAGGACCTGTGCCGGCGGGGCCACAGCCTGCTACTGTGTTCACGCGAGGAGCCCGGCCTGGAGGACTTCGCCCAGGCTTTGGACCTACACCAGGCCCAGGCTCTGGCCTGCGTGGAGGCCGGGCTGGGCCGACCCCGGGTGGCCGAGTGCTTCCTGCAGGGGGCCCTGCGGCGCTTCGGGGAGAGGCAACTGGGTGAGGCCTGGCGTCTCTCGGAGTACGGGCTGAGGGTGGAGGACAGCCATGTGGAGCTGCGCCGGCTGAGGGCCCGGATCAAAAGAGACGCCACGGGCTCCTGCATCGTCAACTAG

Function

GO: NA

KEGG:

id description
K24947 TTC34; tetratricopeptide repeat protein 34

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002110 True 3519 mRNA 0.69 9 3717997 3730830

Neighbor

gene id symbol gene type direction distance location
AMCG00002112 NA coding upstream 7276 3708192 ~ 3710721 (+)
AMCG00002105 NA coding upstream 75838 3628451 ~ 3642159 (+)
AMCG00002106 NA coding upstream 99805 3606885 ~ 3618192 (+)
AMCG00002107 NA coding upstream 123015 3589367 ~ 3594982 (+)
AMCG00002099 NA coding upstream 155730 3561618 ~ 3562267 (+)
AMCG00002111 NA coding downstream 14018 3744848 ~ 3761328 (+)
AMCG00002109 slc45a1 coding downstream 48467 3779297 ~ 3786544 (+)
AMCG00002115 NA coding downstream 66425 3797255 ~ 3815714 (+)
AMCG00002114 NA coding downstream 107533 3838363 ~ 3842411 (+)
AMCG00002119 NA coding downstream 155657 3886487 ~ 3897924 (+)
G120827 NA non-coding upstream 215070 3500337 ~ 3502927 (+)
G120823 NA non-coding upstream 223930 3491280 ~ 3494067 (+)
G120794 NA non-coding upstream 601573 3113450 ~ 3116424 (+)
G120779 NA non-coding upstream 616951 3100278 ~ 3101046 (+)
G120778 NA non-coding upstream 617855 3099607 ~ 3100142 (+)
G120928 NA non-coding downstream 57886 3788716 ~ 3791941 (+)
G120961 NA non-coding downstream 209626 3940456 ~ 3940716 (+)
G120974 NA non-coding downstream 356329 4087159 ~ 4087472 (+)
G121044 NA non-coding downstream 850024 4580854 ~ 4581879 (+)
G121045 NA non-coding downstream 851143 4581973 ~ 4582280 (+)
AMCG00002098 NA other upstream 175820 3533814 ~ 3542177 (+)
G120742 NA other upstream 758522 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 863870 2852154 ~ 2854127 (+)
G120518 NA other upstream 1777181 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 2725233 682670 ~ 992764 (+)
AMCG00002152 NA other downstream 1488000 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 2855824 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 3662970 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 5007941 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 6113375 9844205 ~ 9851312 (+)

Expression


Co-expression Network