AMCG00002113


Basic Information

Item Value
gene id AMCG00002113
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3768155 ~ 3777213 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002113
GCGGCTCTTCCCACTACGCGTGTGAGACAGACACAGCAGGAAGGTTGTTAGAAGCGTTTTGCTGTAACATTCAtagattttaattgtatgtatatatatatatatatatatttaattgaagaaaaatgaGCGCTGTAGACCTGGCTAAAATCGGCGCGAATGTGCTGAAGAATGCTGCGACTGGAGAGatgGTGCAGCTGCAGTCTCTGTGGCAGGACCAGGCCGTCGTCCTGTTTTTCTTGCGTCGGTTCGGCTGCCAGATCTGCCGCTGGACGGCCGCGGAGGTCAGCAAGCTGAAGGAGGACCTGAGTGAGAACGGCGTGGCGCTGGTGGGCATCGGGCCCGAGGAGACCGGCCTTCGGGAGTTCAAGGAGGGAGGCTTCTTCAAGGGCGACGTGTACATTGATGAGAAGAAGCAGTGCTACAAGGATCTGGGCTTCAAAAGgtacGGTGCCCTGAGCGTGGTGCCGGCGGCCCTGGGGAAGAAAGTGCGCGACGTTGCCACCAAGGCGAACGCCCAGGGAATCCAGGGAAATTTCTCTGGCGATCTGCTGCAGAGTGGAGGCATGCTCATCGTGGACCGAGGTGGGGAGAAGGTCCTGCTGCACTTTGTCCAGGACTCCCCCGGAGATCATGTCCCCCTGGAGACCATCGTCCAGACTCTGGGCATCTCCGCCGAGGTGCAGCCAGGCCAGAGACCTCAGTGCAACGACGATGTGTGCACACGATAAGAGCTGATGCCCAGACGGCGCTGTGTGGAGGACACCTCGTTCCCCAGCTGCGTGGAGCCGCTGTGAGGCCGGGCTGCACTCATTCCCGAAGGAAGGACAACTGGGCTTcccttacattttctttctactATTATATATTTGATGCTCATCCATGACTTTGATAATGTTCTTACAAAATGGTGGTTACTTAGATTGGGGCTTTTGGAATTAATCAAAAGATAACGTGCggtatttatagaaatcagtaTAACCTGGTTAGGAATCCGTTAGTTTCCTTGTACCTGATTGGTTGGGAAAGAGTGAATGGAATTGTGGCCTCTCATTTGAAGAACAGAACCGGTCCTTTTTGCTGGTCAGCTCACTGCCAAGAAACAAAGTGAACATGAGAGCTCTACATAACTGCTCTGCGGTGCTAATATAAGGACGTGTGTACAGATAACAGTTATAACGAATTAAAGTGATGCACTAACAagacaatcattttatttttccactgtttGGGATGCGTTTGACCATCAAGTCAACGCTCCCACGTCCAAGAGGCTCTGAATGCTTCTGTGAACAAATCCGGTGTGCAGATCTGTTTGGGTCCCTGACTCACGGCTTCAGCTCGTGCCAAGGAGAGTGATGGCGTCGTCGCGTTTGGGGTTTGCCGGCTGGCCGTGCATACACTTCAATTGCAGGGACCGAGCAACCAATGCGAATGAGACAAATAAAAGGAACGAACATAAGAAACCCATTTCTCACTGGCTGAGTGTGTCCTGTCTCCCACAACCTCCGGGGAGGCGGCCTGTGTTTCAGGTCTCTGTAATCTGTCTCACTTACAGGCTGGAGGCCCAGTGCCAACCCCCCCCCATTCTCTGATTTTGGCGGTTAATTTTTAACTCTTCAGCTCCATGTTTAACCGCTTTACAAATGtgattgtaaaataatgtaataaaggGGACAGGAGCAGGGGATTGTGGG

Function

GO:

id name namespace
GO:0001516 prostaglandin biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005829 cytosol cellular_component
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K15717 PRXL2B, FAM213B; prostamide/prostaglandin F2alpha synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002113 True 1697 mRNA 0.51 7 3768155 3777213

Neighbor

gene id symbol gene type direction distance location
AMCG00002108 NA coding downstream 106385 3641182 ~ 3661770 (-)
AMCG00002103 NA coding downstream 234336 3527352 ~ 3533819 (-)
AMCG00002102 NA coding downstream 257175 3503046 ~ 3510980 (-)
AMCG00002104 NA coding downstream 269349 3496159 ~ 3498806 (-)
AMCG00002096 NA coding downstream 493237 3274423 ~ 3274918 (-)
AMCG00002116 NA coding upstream 11845 3789058 ~ 3794546 (-)
AMCG00002118 NA coding upstream 40609 3817822 ~ 3824170 (-)
AMCG00002117 NA coding upstream 48963 3826176 ~ 3834827 (-)
AMCG00002121 NA coding upstream 133985 3911198 ~ 3918187 (-)
AMCG00002122 NA coding upstream 142020 3919233 ~ 3920341 (-)
G120914 NA non-coding downstream 63791 3700492 ~ 3704364 (-)
G120853 NA non-coding downstream 227329 3538762 ~ 3540826 (-)
G120849 NA non-coding downstream 231630 3535822 ~ 3536525 (-)
G120842 NA non-coding downstream 265227 3500281 ~ 3502928 (-)
G120841 NA non-coding downstream 274105 3492956 ~ 3494050 (-)
G120975 NA non-coding upstream 309895 4087108 ~ 4087418 (-)
G121039 NA non-coding upstream 790226 4567439 ~ 4569294 (-)
G121111 NA non-coding upstream 939379 4716592 ~ 4722181 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding upstream 1333389 5110602 ~ 5116017 (-)
G121152 NA non-coding upstream 1350825 5128038 ~ 5137006 (-)
G120907 NA other downstream 51903 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 301694 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 581802 3173505 ~ 3186353 (-)
AMCG00002094 vamp3,LOC107582408 other downstream 639715 3113442 ~ 3128440 (-)
G120748 NA other downstream 763238 2995508 ~ 3004917 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other upstream 7023 3784236 ~ 3786544 (-)
G120993 NA other upstream 437502 4214715 ~ 4219877 (-)
AMCG00002167 NA other upstream 2198512 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 4049428 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 5831537 9608750 ~ 9620127 (-)

Expression


Co-expression Network