AMCG00002116


Basic Information

Item Value
gene id AMCG00002116
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3789058 ~ 3794546 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002116
CTTATCAATTGTGTATTTCTTGCCTCCGTGTGATAGACAGTATGTGTTCAGCTGGTTCAGTGTGCATCACCTGTTACCCCAATATCTGGCACATTGTTGGCCATGTTTTTGATCACGCTAAACTCCAGATGATAAAACGACTGGGTCCCTTTAGGCCATGTAGGCTAAGGAGATAACAATACTAAAATATGTAAAGTGTAAAATCAATAAGCAGCTTATCAGCACAGAGACAGTTGAGATCACAATCCtgtacaacactgaaaacaGTATTTAGATCATCTGCAAAAAAAGAATGGAACTCATGCACTAAAATCAAACGTAGACAATTTAAATTTTACAAGGCTTTTCTGTATTCTTGAACGTTACATCTAGGAACTGCACAATGTGGTTTCTACCTACCACAAGATATCTTTGAGGTTTATTTCTCTCAGAATGAACTATGCAAAGGCAGACCTTTTAATGAATAAAGGTACCTCATTGATGTTTGAAGTTTCCTCTATTGTCCTTCCACTGTGCTGCTTGACCTATAGGCACACATAATATATCAGGATACAGCACGCTCTCTCTAGACAAAATACCAGATTTCTCCCAGAAAAGATCCACTCTGCTTTTGCCTGGAAACTGCAAGATGGACCAGACTGTAACTTTCTTATTGGCTCCCCCCTAAGATTGGACAATTCCTTCTCCCCTGACGTGGTTAACCCCCCAACGTCCTCTGATGGTGACGCAGTGTGCCAAGACAAAAGCCAGTGGCCGGGGATTCTGCCGAATGGTCTTGTTTAAAATGCCGGTGCGCAGGgcttgtgcttttctttcttatCTCCCCAATGAAGTGGGAGCCTGCAGGGTCGATTGCTCCGTGTTACCATGAGAATGGCTCGGCCTGACCTCCTGCCGCTCCCTCCCCTGCCCTCGGTGCTGCCACGGCGCTCCTGTGAACGGGGCAGCCTGATTGATGTTGCCACGAACTGCCCTCCTCAACACCCATGGCCTGCACTTCCCCTGTCTCTGCCTCCCTTGTTTACTTCCCATCTctcacgtttttttttcttctgtgttaaACAGATCAGTCAGTTGCAGGTCAGTGGGTGTCCCCTCAGACCGAGGCCATAATGATGCTTTTCTTGTCACATTTTTGGTGACCCCCGCCACACACCCTCCAAACCACCTCTTCATGCACATCTTTGGGCACGCAGAAGGCCTCGAGCAACTAAGGGACGAGTGCATTGATCAAGAACAAAGTTTTCACAGCTTGTTTCTTTTCagtattgttttcctttaaactCTCGAACGTCTTAAGGAAATACAACAGAGAACTGAAATCAACGCCCAACAAGCGTACATCCCTCAAGGATGTCAATGTAAGAGCTGAAATTGATGGAAACATAACGATGGAGAACCTGTTTCGCTTCAGACACTAGGCCTAGATTTTGACTGTCCAAAGAGCAGACCCCACTAGTTGGCTTCATCTCTCGGCCCTTTACCACAATTTGTGTAGACACTAGGGGAGATGTGTATTCAGGGAATGAAGTTGCTCTATTTTCCAGAGTTTCGAAGCACAATGATATAAATTAAAGATACAGACTGCTACATGCTTATACTTACAGTTAATTGTAAAGCACAACCAAATGTTCAGAAGCTGTATAATAGGAAAAACACATAAGACATGTACAGAAGCTCTGTattcaatataataaacaatatgcGTCAAtactaattatttgtttatttgcatgaaGAATTGTTTTggaggagaaaaatgaaaaggcgCAAAGTGTTTAATACAATTCAAGGACGGGCCAAGAGAGAGGAGGAGCTCCCTTATGAAATAGTTAACCTGGCCCGCGTTGAAACCCGACACCGCACTTCCCAAAACTGCCAACAGAAAAGAGAGCGAATGAGCAACAAAGACACGACAACGTGCACTTGGGTGAACTCTCAATGCATGATGCACGAAACCAGTTACACATGAAAAagccaagaaaaaatacaaaatcaaatatataaatctcaTTCGTTTTCATTTCACAGTCTTAAGTCAAAAGCGACGAAAACAACCCCCCGTCCGATCAGAGTTGATGCATTAGGCAATCTAACGAGCGTAGGGAAATAAAGtcagatatataatatatcagaGCTCCGTGCACCGAGCTGCAGATGCAATGTGCGGCTCTTCACGGGGGAGGACGCGTCAACCTCATGTCAACATCACTACCGTGTTTACGAGAGCCGCGCatcaatgaataataaactgtatactaaatatatatgtatctatttcTTATTGACGCATCCGATACCCAATAGAGACAAAGGGAACAGTTTCTCTTGTGTAGACGAGAGGGTATTGTTCAGCGATGACCGACATTTGAATTAGCCAATGAGAAGCTCGAAAAGGGGCATCGTTTTGCTGTTAATGAGGGGGCGTGTCCTTGCATGTACATCGACGAATagacaataaatatacacaggGGGCGTGTCCTAGAAGGCGGGACTCTGGGGCGTGATCGACGTGCGAGTCCTCCAATGGGCGCAGGCGAAAGTCCCGTCCACCAATCCCGAGCCGCCTCGACCTGCCCCCTCAGGAGGACGCTATTTAATTCTCAGGTTTGAAGCGCCGTGTTTCACTCCTCTCCTCGCCTCCGAGTCGCCAGTTTCCCATCCGAGACAGGGGTCGCTGCCTTCCGTACACCCGAAGAAAAGAAACCATTAATTACCACCTTCTTCTGTCTGGGAGGCTTGTTTTCTTCGTCCGCACACAATGGCTGATACCGCAGTTGACACGACCACCGCCACCCCCGAGGTTACCCCAAAGGAcctgaaggagaagaaggaggttGCCAAGGAGGAAGTGGAGAAGActgaggagaagaaggaggagaagaaggaagagAAGAACGGCAGCGCAGACGCACCTGCCAACGGCACGGAGGCGAACGGTGCCGACCACGGCGAGGAAACCCCtgaggatgaggaggaagacGAGGAGGGAAAAAGTGGAAACCGCAAAAAAGCAGAAGACGGAAAACGGCGACTCCACAGAGGCCGAAGCGAAAGCCTAGAGCCCGGCCCGCCCTCGCCGCCCGCTCTGTCCGCCTGGTCACCCCGACCCAGTAGAGGTTGTGCTTTTGTGAAcTCGGTCCTGCCGAGGAGGATTGTGCGGTTAAACGCCGGCCGCATATTTGCCCGGCGAAGCTCCAGTACGACTGCATGGATGGCGAACGCGGCCACGAGGGTCTCTGCCTCGCAACAAGCGAAACCCGCCCAGTCCAGAGACCCCGGCCGCGTCTATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002116 True 3295 mRNA 0.48 5 3789058 3794546

Neighbor

gene id symbol gene type direction distance location
AMCG00002113 NA coding downstream 11845 3768155 ~ 3777213 (-)
AMCG00002108 NA coding downstream 127288 3641182 ~ 3661770 (-)
AMCG00002103 NA coding downstream 255239 3527352 ~ 3533819 (-)
AMCG00002102 NA coding downstream 278078 3503046 ~ 3510980 (-)
AMCG00002104 NA coding downstream 290252 3496159 ~ 3498806 (-)
AMCG00002118 NA coding upstream 23276 3817822 ~ 3824170 (-)
AMCG00002117 NA coding upstream 31630 3826176 ~ 3834827 (-)
AMCG00002121 NA coding upstream 116652 3911198 ~ 3918187 (-)
AMCG00002122 NA coding upstream 124687 3919233 ~ 3920341 (-)
AMCG00002120 mrps16 coding upstream 150591 3945137 ~ 3946555 (-)
G120914 NA non-coding downstream 84694 3700492 ~ 3704364 (-)
G120853 NA non-coding downstream 248232 3538762 ~ 3540826 (-)
G120849 NA non-coding downstream 252533 3535822 ~ 3536525 (-)
G120842 NA non-coding downstream 286130 3500281 ~ 3502928 (-)
G120841 NA non-coding downstream 295008 3492956 ~ 3494050 (-)
G120975 NA non-coding upstream 292562 4087108 ~ 4087418 (-)
G121039 NA non-coding upstream 772893 4567439 ~ 4569294 (-)
G121111 NA non-coding upstream 922046 4716592 ~ 4722181 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding upstream 1316056 5110602 ~ 5116017 (-)
G121152 NA non-coding upstream 1333492 5128038 ~ 5137006 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 2514 3784236 ~ 3786544 (-)
G120907 NA other downstream 72806 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 322597 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 602705 3173505 ~ 3186353 (-)
AMCG00002094 vamp3,LOC107582408 other downstream 660618 3113442 ~ 3128440 (-)
G120993 NA other upstream 420169 4214715 ~ 4219877 (-)
AMCG00002167 NA other upstream 2181179 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 4032095 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 5814204 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 5962879 9757425 ~ 9801108 (-)

Expression


Co-expression Network