AMCG00002117


Basic Information

Item Value
gene id AMCG00002117
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3826176 ~ 3834827 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002117
CGGTCAGTGAGAATGCAGTGGGTGTTGAGGATGCTGCTGTTGAGCAGCGTTCTCAGTCCCGGCCACGCTGAGGACGGCTTCCCAGCGTGGTTTAAAAACATCTCCACCGACCTGTTCTGGTCCAAAGGGGACATCATGCTGGGGGGGATCTTTCCCATCAATGAACTCGGCAACTCCAGCTCGAGCCAGCGGGAGCAGCCCGACGACGTACACTGCGACAGGGTCCTGTCCTACGGCGTGAGCCAGGTGCTGGTGATGAAGTTTGCAGTGGACGAGATCAACTCCTCTCCCCTCGTGCTCCCTGATACCAGTCTGGGCTTCGAAATCTATGACTCGTGCCGACAGCCCTCGGTCATCATGCAGCCGGCCATGCTGTTCCTGAGCGAGGGGAAGTCCCAAAGCATTCGTGTGCTGTGCAATTACACGGGCTACAGCACACGCGTGGCGGCTGTCATCGGGCCCTCCACCTCCGAGATGGTCTCCATCACGGGCAAACTCTTCAGCTTCTTCCTCATGCCACAGGCCACCATCAAGGACATCCTGCAACGCATCAACCAGACCGACGTGGGCGTGGTGGTGCTGTTTGCCCTGCCCAGTGCGGCCATGGACTTCTTCTCTATGGTGATCAGCAGTAAGATGCAGAAGGTGTGGGTGGGCAGCACCGCCTGGGCCCTGGACAAGAATTTAGTCTCCATGGAGGGCATCCGAACGGTGGGCACAGTGCTGGCCTTCGCCGATAGGAACCAGAAGCTGGAGCTCTTCGAGAACTACACCTACGCCTTCTTATCCCGGCTGGAGCGCGAGCAGCTCAACGGCACCTCCAATGCCAACAGCACCAAAACTGTGGACTTCCCCTTGGCTGATCCTTGTCCCTCCTGCCGGGGCCTGACTCTGCAGAACATATCCATGGCCACGGATGCCCGGCTGCAGCGCACAGCCTTCAGCGTGTACACGGCGGTCTACAGCGTGGCCCACGCCCTGCACAAGCTGCTCAAGTGCAACCAAACACGTTGCCTGAAGAAGGGCTCGGTGCTCTATTCCTGGCAGCTGCTGGAAGTGCTGAAGACCATTTCTTTTGACATCAATGGCACTCAGTTCAAGTTCAACGAAGAGGGGAACCCCAGCATCGGGTACACGGTGCTCACATGGATATGGGGCAAAGACCAGGTCGAATTCCAGGACATCGGCAGCTATGTGGAAAAGTTGGAACTGAAGAAGGAGCTCATCAAGTGGCATCAGAGCACGTCTAATGAGGTCCCAAAGTCCACCTGCTCTGCCAACTGTCAAACTGGCCAGGTGCGCCGAGTGAAAGGATTCCACTcctgctgctttgactgcattGACTGCAATGAGGGGACTTTCCAGAACCGCACAGAGGACTTCCAGTGCACAGACTGTCCGGTCGGCCAGTGGTCGACCCCGCGGAGCAACCAGTGCATAGATCCCACCTTCCACTACCTGGAGTGGAATCAGAACGAGTCCCTGGGGCTGGTGCTGGGCGCGGTGGTGGTGCTGGCCTGCCATGCGGCCGTGGGGTGGCTGTTCCTACGGCACTGGGGGTCCCCGCTGGTGTGCGCCTCGGGGGGGAGTCTCAGCGCCCTGGCCCTGCTCAGCCTGTCGGGGGGGTGTGCCAGCCTCTCCCTCTTTCTGGGCCAGCCGGGGGACGTGGTGTGCCGTCTGCAGCAGCCCCTCAATGCCATCTTCCCCACCTTCGCCCTCGCCACTGTCCTGGCCATCTCACTGCAGGTGATCTACGTGACGGAGTTCCCCGGGGCCACCCCCTCGAGGCTGGAGTCCCTGCGTGGGTTGGGCAGCTGGCTGGTGGTGCTGGCAGTGTGCAGCGTGCAGGCCGGGCTGTGCGGCTGGTTCGTGGAAGAGGGGCAACCCCACTCCCAGTACGTGGCCAGAATGAAGGTCAACTTTGTGGAGAGCTTCCTGCGATGCGAGGTGGAGCCCATGGTCGGCTTCGGTCTGATGTACGGCTTCAACGGGCTGCTGGCTCTCGTCTCCTTCATGTGCACTTTCATGGCGCAAAAGCCAGCCAAGCAGTACAACCTGGCACGGGACATCACTTTCTCCACCCTGGCCTACTGCGTGGTGTGGGTGGTCTTCATCCCCATCTACACCGGCCTGCAGGAGAAGACCAAGTCCCTGGCCCAGATGGCAGCCATCTTGCTCAGCAATCTAGGGCTGCTGGCCGCCTACTTCTTCCCCAAGTGCCACCTGCTGCTGACCACCCCCGACCTCAACACACTAGACTACTTCCGCACATACCTAGAGGGCGCCCCCCTAAAACAGGAGGACAGTCAGGAGAACCAGGGTGACCAGGGGGGAGCAAATGGGCAGGGGGCCCAAGAGAAGTag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002117 True 2364 mRNA 0.60 8 3826176 3834827

Neighbor

gene id symbol gene type direction distance location
AMCG00002118 NA coding downstream 2006 3817822 ~ 3824170 (-)
AMCG00002116 NA coding downstream 31630 3789058 ~ 3794546 (-)
AMCG00002113 NA coding downstream 48963 3768155 ~ 3777213 (-)
AMCG00002108 NA coding downstream 164406 3641182 ~ 3661770 (-)
AMCG00002103 NA coding downstream 292357 3527352 ~ 3533819 (-)
AMCG00002121 NA coding upstream 76371 3911198 ~ 3918187 (-)
AMCG00002122 NA coding upstream 84406 3919233 ~ 3920341 (-)
AMCG00002120 mrps16 coding upstream 110310 3945137 ~ 3946555 (-)
AMCG00002131 NA coding upstream 385175 4220002 ~ 4253397 (-)
AMCG00002132 glut1a,LOC106583009,LOC106565867,LOC107569806,LOC107666081,LOC107549315 coding upstream 579455 4414282 ~ 4423276 (-)
G120914 NA non-coding downstream 121812 3700492 ~ 3704364 (-)
G120853 NA non-coding downstream 285350 3538762 ~ 3540826 (-)
G120849 NA non-coding downstream 289651 3535822 ~ 3536525 (-)
G120842 NA non-coding downstream 323248 3500281 ~ 3502928 (-)
G120841 NA non-coding downstream 332126 3492956 ~ 3494050 (-)
G120975 NA non-coding upstream 252281 4087108 ~ 4087418 (-)
G121039 NA non-coding upstream 732612 4567439 ~ 4569294 (-)
G121111 NA non-coding upstream 881765 4716592 ~ 4722181 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding upstream 1275775 5110602 ~ 5116017 (-)
G121152 NA non-coding upstream 1293211 5128038 ~ 5137006 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 39632 3784236 ~ 3786544 (-)
G120907 NA other downstream 109924 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 359715 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 639823 3173505 ~ 3186353 (-)
AMCG00002094 vamp3,LOC107582408 other downstream 697736 3113442 ~ 3128440 (-)
G120993 NA other upstream 379888 4214715 ~ 4219877 (-)
AMCG00002167 NA other upstream 2140898 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 3991814 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 5773923 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 5922598 9757425 ~ 9801108 (-)

Expression


Co-expression Network