AMCG00002120 (mrps16)


Basic Information

Item Value
gene id AMCG00002120
gene name mrps16
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3945137 ~ 3946555 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002120
ATGGCCGTGTCTCCCCCAGCGCCCCTGCTGCTCAAGCAGTACCACGGCGGCCATGTGGTGATCCGGCTGGCCCTGGGCGGCTGCACCAACCGGCCCTTCTACCGCGTCGTGGCCGCCCACAGCAAGCGCGCCCGGGACACCGGCCACATCGAGCAGCTGGGCTCGTACGACCCCATGCCCAACGCCCACAACGAGAAACTGGTCAGCTTCAACTACGACCGCATCAAGTACTGGATCGGCTGCGGGGCTCATCCCACCAAGCCCGTCTCCAAGCTGCTGGGGCTGTCCGGGTTCTTTCCCCTCCACCCCATGACAGTGACCAATGCCGAGCGCATGAGGAAAAGCCCCACGCAGACAGGAGAGGCATCTCCAGAGGAGGGGGATGAGGGAGAACGGCAGGAGGTTTAGCCTTCCTTCTCTCTGAACTTGACCCTCAGCCATTTGGACTGAGATCTGGGACCCTTACAGACGCACTGCTGCTGTCATTGTGCGGACAGCGGCGCAGCCTAGAGAAGCTTTCCGGGGAGACGCTGTGCTCTCTTGGGGTCTCCCGTTTTGTAAAGAAGTATGTTGTTTATATggcaaataaatattaatttcttgtgTCCTTTTCCATAGATGCTTaaatctgattttcttttttgtttaatgagtgttttatttatgttctatTGACTTCAGTTCTATTTTAAATTGAGTTCCcagtttaaataaacttttttcttcCAGTAACTAGTTAATGTTTTCAATCAACTAAC

Function

symbol description
mrps16 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is expressed in alar plate midbrain region; eye; immature eye; midbrain; and optic tectum. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 2. Orthologous to human MRPS16 (mitochondrial ribosomal protein S16).

NR:

description
PREDICTED: 28S ribosomal protein S16, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02959 RP-S16, MRPS16, rpsP; small subunit ribosomal protein S16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002120 True 758 mRNA 0.53 2 3945137 3946555

Neighbor

gene id symbol gene type direction distance location
AMCG00002122 NA coding downstream 24796 3919233 ~ 3920341 (-)
AMCG00002121 NA coding downstream 26950 3911198 ~ 3918187 (-)
AMCG00002117 NA coding downstream 110310 3826176 ~ 3834827 (-)
AMCG00002118 NA coding downstream 120967 3817822 ~ 3824170 (-)
AMCG00002116 NA coding downstream 150591 3789058 ~ 3794546 (-)
AMCG00002131 NA coding upstream 273447 4220002 ~ 4253397 (-)
AMCG00002132 glut1a,LOC106583009,LOC106565867,LOC107569806,LOC107666081,LOC107549315 coding upstream 467727 4414282 ~ 4423276 (-)
AMCG00002136 NA coding upstream 624421 4570976 ~ 4579172 (-)
AMCG00002139 NA coding upstream 647597 4594152 ~ 4600114 (-)
AMCG00002138 NA coding upstream 655851 4602406 ~ 4636492 (-)
G120914 NA non-coding downstream 240773 3700492 ~ 3704364 (-)
G120853 NA non-coding downstream 404311 3538762 ~ 3540826 (-)
G120849 NA non-coding downstream 408612 3535822 ~ 3536525 (-)
G120842 NA non-coding downstream 442209 3500281 ~ 3502928 (-)
G120841 NA non-coding downstream 451087 3492956 ~ 3494050 (-)
G120975 NA non-coding upstream 140553 4087108 ~ 4087418 (-)
G121039 NA non-coding upstream 620884 4567439 ~ 4569294 (-)
G121111 NA non-coding upstream 770037 4716592 ~ 4722181 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding upstream 1164047 5110602 ~ 5116017 (-)
G121152 NA non-coding upstream 1181483 5128038 ~ 5137006 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 158593 3784236 ~ 3786544 (-)
G120907 NA other downstream 228885 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 478676 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 758784 3173505 ~ 3186353 (-)
AMCG00002094 vamp3,LOC107582408 other downstream 816697 3113442 ~ 3128440 (-)
G120993 NA other upstream 268160 4214715 ~ 4219877 (-)
AMCG00002167 NA other upstream 2029170 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 3880086 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 5662195 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 5810870 9757425 ~ 9801108 (-)

Expression


Co-expression Network