AMCG00002121


Basic Information

Item Value
gene id AMCG00002121
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3911198 ~ 3918187 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002121
ATGTGCCTCATTCTTCTACGGAAACTACTGAACAACACACAACGTCACCTCATACAACAGAAGAACCATCTTCCacagaaaaacattcaacacacttcacaacagaagagaaaaataaatcAAACTAGTCTAAAGCATACAAGTACAAAGTCACCTCACACTACAGAAGAACCATCCTCCACTGGAAAACACTCAACACATTTCACaccagaagagaaaaataaatcgtCAACCTCTACTGTCTCCACTGAATCACACACTTCAGTCACATCAAATGTTCCTCATTCTTCTAAAGAAACTACTGAACAACACACAACGTCACCTCACACAACAGAAGAACCATCTTCCACAGAAAAATATTCAACACATATCACACCAGAAGAGAAAAATACTTCATCAACCTCTAATCTCTCCACAGAATCACACACTTCTGTGACATCAAATGTTACTCATTCCTCCATAGAAACTACTGATCAACATACGACGTCACCTCAAACTACACAAGAACCCTCGTCATCTGGAACACATTCAACACACTTCACACCAGAAGAGAAAAATACTTCATCAACCTCTACTGTTTCCACTGAACCACACACTTCTGTGACATCAAATGTTGCGAATTCTCCTACAAAAACTACTGAACAACACACAACGTCACCTCACACAACAGAAGAACCATCTTCATCTGGAAAACATTCAACACACTTCACACCAGAAGAGAAATATACTTCATCAACCTCTACTGTCTCCACTGAACCACATACATCTGTAACATCAAATAATCCTCATACTTATACAGAAACTAGTCTAAATGATACAAGCACAAGGTCACCTTACACTACAGAAGAACCCTCTTCATCTGAACCACATTCAACACATCTCACaccagaagagaaaaataaatcatctaCCTCTAATATTTCCACTGAACCACACATTTCAGTCACATCAAATGTTCCTCATTCTTCTACAGAAActacacaacagcacacaaagTCACCTCACACTACAAAAGAAAATCATTCATCAACTACAAGAACCCACAGTACATCAATCCACACTACAGAAGAAGCTTCCTCATCCAGtggaaaacaatgcaatgaTGCTGAATGTGACTGCAACGGGTATCCCTGTGTCTTCAGTAGTATTACTGGGACATGTCAATGTCAATGCCCGAATTTCACATTGAGCAATTCACACTGCCTTGCTGGGGAGAACTACACCACAGTGCACATCAATTCCAGCGCAATACCAACCAGGAACTTCACTATCTCCTTGAGAATACATAAGGAATTTAACCCTGACCTGGAAAATACAAGCTCTCCgttatacattaaatacacagacaTCATACAACCTGAGCTGGAGAAATTGTGCAAACAGGCTGATCCAGACAATTTCAGAAATGTGACGATCACTGGTTTTAGGAGTGGGAGCATCATCGCAGAAAGTGTTGCTCAGTATAACTATCCCAACAATCAGACACAAATTGAGTTCCTGAACACAGGACTGAACTCCACATTACATACTATGTTTAACCCTCACAATTTGACAAACATAACTGAGAGATTAAATGCAACAGTAGAGCCTACAATCGTTGTGCAAAATACCACTGTACAAAaTGTCTTAGACCTAAGACCATACGTCAACTGTAGCTTGAGTTACTCGAACTACACAATGAAAGTTGTGAATGGGGTTTTGGAGTGTGAAGGACCCTGCGCCACTCATCGAAACTACTGTAGCGGACATGGAGCCTGCTCTAACTTAAAAGATGGACCAAGTTgcaaGTGCTACGCGTCGGACTTCCACCAGTACTCCGGGGAACACTGCCAGCTGTACGGGATCAGCGCCGGTTTCTACGCTGTCCTGTTCGGCGTGCTGGGAGCCGCCCTGCTGCTCATCATCATTGTGATCGTGGCCGTCCTGGTGCTGAAGAAGAAGACAAGAACGCACTCATGGTGGGTCGGTGTGGGGAAAGCCTCTGCTCTTATCCGCTGGGAGGCAGACCTGGGCAATATGGGCTCAAGCACTGAAGGTTTATCAGGGAGGACCGCAAAATACAACCTCAATGAAAACATGACTTACGCCAACGAAATTGATCAAGGAGTTTTCAGGCCTAAGCTGGAAAATGTTGACGTCTCGCAAAACGTCAAGACCAAGCGACCAGAGCTGCGCAGCCCGTCCAGCGATCAATAG

Function

GO: NA

KEGG:

id description
K22016 MUC3_17; mucin-3/17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002121 True 2196 mRNA 0.43 10 3911198 3918187

Neighbor

gene id symbol gene type direction distance location
AMCG00002117 NA coding downstream 76371 3826176 ~ 3834827 (-)
AMCG00002118 NA coding downstream 87028 3817822 ~ 3824170 (-)
AMCG00002116 NA coding downstream 116652 3789058 ~ 3794546 (-)
AMCG00002113 NA coding downstream 133985 3768155 ~ 3777213 (-)
AMCG00002108 NA coding downstream 249428 3641182 ~ 3661770 (-)
AMCG00002122 NA coding upstream 1046 3919233 ~ 3920341 (-)
AMCG00002120 mrps16 coding upstream 26950 3945137 ~ 3946555 (-)
AMCG00002131 NA coding upstream 301815 4220002 ~ 4253397 (-)
AMCG00002132 glut1a,LOC106583009,LOC106565867,LOC107569806,LOC107666081,LOC107549315 coding upstream 496095 4414282 ~ 4423276 (-)
AMCG00002136 NA coding upstream 652789 4570976 ~ 4579172 (-)
G120914 NA non-coding downstream 206834 3700492 ~ 3704364 (-)
G120853 NA non-coding downstream 370372 3538762 ~ 3540826 (-)
G120849 NA non-coding downstream 374673 3535822 ~ 3536525 (-)
G120842 NA non-coding downstream 408270 3500281 ~ 3502928 (-)
G120841 NA non-coding downstream 417148 3492956 ~ 3494050 (-)
G120975 NA non-coding upstream 168921 4087108 ~ 4087418 (-)
G121039 NA non-coding upstream 649252 4567439 ~ 4569294 (-)
G121111 NA non-coding upstream 798405 4716592 ~ 4722181 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding upstream 1192415 5110602 ~ 5116017 (-)
G121152 NA non-coding upstream 1209851 5128038 ~ 5137006 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 124654 3784236 ~ 3786544 (-)
G120907 NA other downstream 194946 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 444737 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 724845 3173505 ~ 3186353 (-)
AMCG00002094 vamp3,LOC107582408 other downstream 782758 3113442 ~ 3128440 (-)
G120993 NA other upstream 296528 4214715 ~ 4219877 (-)
AMCG00002167 NA other upstream 2057538 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 3908454 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 5690563 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 5839238 9757425 ~ 9801108 (-)

Expression


Co-expression Network