AMCG00002126 (pax7)


Basic Information

Item Value
gene id AMCG00002126
gene name pax7
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4032134 ~ 4033552 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002126
ATGTACCCTTCGGCCCTGTCCTACATCCCCGCTTACAACGTCTGGTTCAGCAACAGGCGGGCGAGGTGGCGCAAGCAGGCCGGAGCCAATCAGCTGGCAGCCTTTAACCACCTGTTACCTGGGGGATTCCCACCCACTGGAATGCCCACCCTGCCCACATACCAGCTTCCCGAGTCCAGCTACCCCACCACCACAATATCGCAGGATGGTAGCAGCACCGTGCACCGGCCCCAGCCCCTGCCCCCCTCCACCATGCACCAGGGCGGCCTCACCGCGGACAGCAGCTCCGCCTACGGGCTCTCGTCCAACCGCCACAGCTTCTCCAGCTACTCGGACACCTTCATGAGCCCCTCAGCGTCCAGCAACCACATGAACCCTGTGAGCAACGGGCTGTCTCCACAGGTCAGTGACGGGCTGGTTCAAGAtcctaattaa

Function

symbol description
pax7 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including animal organ development; chordate embryonic development; and positive regulation of nitrogen compound metabolic process. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in alveolar rhabdomyosarcoma.

NR:

description
PREDICTED: paired box protein Pax-7 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0048066 developmental pigmentation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002126 True 435 mRNA 0.62 3 4032134 4033552

Neighbor

gene id symbol gene type direction distance location
AMCG00002125 NA coding upstream 10991 4020228 ~ 4021143 (+)
AMCG00002124 pax7a,pax7,LOC107708260,LOC105907504 coding upstream 44291 3983670 ~ 3987843 (+)
AMCG00002119 NA coding upstream 134210 3886487 ~ 3897924 (+)
AMCG00002114 NA coding upstream 189723 3838363 ~ 3842411 (+)
AMCG00002115 NA coding upstream 216420 3797255 ~ 3815714 (+)
AMCG00002123 pax7a,pax7,pax7b,LOC107708260 coding downstream 20242 4053794 ~ 4057620 (+)
AMCG00002127 park7,LOC107657982,LOC107701995 coding downstream 61798 4095350 ~ 4101806 (+)
AMCG00002128 kcnab2,LOC106565914,LOC101463812,LOC102294726,LOC107701994,LOC108231619 coding downstream 120994 4154546 ~ 4154923 (+)
AMCG00002129 LOC108434650,LOC107672035,LOC107706553,LOC107592856,LOC107701994 coding downstream 142080 4175632 ~ 4175847 (+)
AMCG00002130 kcnab2a,LOC108431628,LOC108255041 coding downstream 159108 4192660 ~ 4219877 (+)
G120961 NA non-coding upstream 91418 3940456 ~ 3940716 (+)
G120928 NA non-coding upstream 240193 3788716 ~ 3791941 (+)
G120827 NA non-coding upstream 529207 3500337 ~ 3502927 (+)
G120823 NA non-coding upstream 538067 3491280 ~ 3494067 (+)
G120794 NA non-coding upstream 915710 3113450 ~ 3116424 (+)
G120974 NA non-coding downstream 53607 4087159 ~ 4087472 (+)
G121044 NA non-coding downstream 547302 4580854 ~ 4581879 (+)
G121045 NA non-coding downstream 548421 4581973 ~ 4582280 (+)
G121114 NA non-coding downstream 715576 4749128 ~ 4752334 (+)
G121176 NA non-coding downstream 1167850 5201402 ~ 5202462 (+)
AMCG00002098 NA other upstream 489957 3533814 ~ 3542177 (+)
G120742 NA other upstream 1072659 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 1178007 2852154 ~ 2854127 (+)
G120518 NA other upstream 2091318 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 3039370 682670 ~ 992764 (+)
AMCG00002152 NA other downstream 1185278 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 2553102 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 3360248 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 4705219 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 5810653 9844205 ~ 9851312 (+)

Expression


Co-expression Network