AMCG00002127 (park7,LOC107657982,LOC107701995)


Basic Information

Item Value
gene id AMCG00002127
gene name park7,LOC107657982,LOC107701995
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4095350 ~ 4101806 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002127
ATGGCCGCAAAACGCGCCCTGGTCATCCTGTCGAAGGGAGCGGAGGAGATGGAGACGGTGATCCCGGTGAGCGTGACGCTAGCGGGCCTGGCGGGGAAGGAGCCAGTGCAGTGCAGCCGAGACGTGCTCCTCTGCCCAGACGCCAGCCTGGAGGACGCCCGCGCGCAGGGCCCGTATGATGTTGTGGTTTTGCCCGGAGGGAACCTGGGAGCGCAGAACCTGTCTGAGTCGTCCGTGGTGAAGGAGGTGCTGAAGGACCAGGAGAGCAGGAAGGGCTTGATCGCTGCCATCTGTGCAGGCCCCACCGCCCTCCTCGCCCACGGGATCGCGTATGGCAGCACCGTCACCACCCACCCCCTCGCCAAGGACAAGATGATGAATGGAGACCATTACAAGTACTCGGAGGCGCGTGTGCAGAAGGACGGCAATCTGATCACCAGCCGCGGCCCGGGCACCAGCTTCGAGTTCGCCCTGGCCATCGTGGAGGCGCTGCTGGGCGCGGACGTGGCGGCGCAGGTCAAAGCCCCCCTGGTCATGAAGGACTGAGCGGGAGCCcctacacccccccaccccccacgcCTTGCCCACACAGGAGCCCCCGCTTCTATGCTCACACGAGTCCGAGCCCCTGAAAGCCCCCCTTTCCCCATGGCAGACCTAGAGATCCAGCATCTGAGCACTTGGTAGGAGAGAATTAGAATCGGATCGTgaaaatttgtgtttttgtttaatttgtaattgcttttgctgtctttttgtttttggcactGTTGCTGCTCCCAGGAGGGGGAATATTTACTAAGTTACAAGATGATGCCCTTTGCTCAATAATGTAACGTTTATGTTGTGGTGTTGCCTCGCTGAGGTGATCCCAGAGGCTGTGTACGTTCTTCAGTTTGTGTTCGTGTCTCTGTGGATAACGGTGGCTTTATGCAATGGGGAAATCCAAACAGATTGTTGATCCAATTTCCCACGTGAGGGCGAATCCTGGTTTCACCTCTAAGATTAGCGTCATTCTCTCCAGCACTGAGGTTTTTTGAGGCCGCCTTGTCATTTCGCTGCCAGGGTCTTAAATGCGGTACTATATAGGCTCGGACAGGTAAAGGAACGAGCGTCTGCCATCCCTGTCATTCACACTGACGTCTGGCCGAAGATACCGCAAATGCCTCTCGATCTTCTTGCTGTAGGAGAGTTACGATGTGCGTGAAACTGGCTGGAGGGAAGATCTGATTGGGTTGCTTGTTGTTTAAGATTAATTCAGGCGTTTTATCTGTTGCCATCAGGTAAGATGTATAACTGGAAATATCCCGGAGGCAAAGTTACGGAGACTTTATCTATCGGTTCTGAAAACGTGTCTCTAATACTTCTCGTCTTTAAtgctgattgtatttttttgttttattgcagctTGGGATTGCTGGGTGTATTGTAGACAAAGAACAGTTCTCTTTAGAAAGGAAACCAGGTGTCACAgatgtattaaaacatttcaaaactgaaTAA

Function

symbol description
park7 Predicted to enable several functions, including hydro-lyase activity; peptidase activity; and protein homodimerization activity. Acts upstream of or within response to oxidative stress. Predicted to be located in mitochondrion. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including alar plate midbrain region; digestive system; male organism; musculature system; and nervous system. Used to study Parkinson's disease. Human ortholog(s) of this gene implicated in Parkinson's disease; Parkinson's disease 7; Parkinsonism; cerebral infarction; and middle cerebral artery infarction. Orthologous to human PARK7 (Parkinsonism associated deglycase).

NR:

description
protein/nucleic acid deglycase DJ-1

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0006954 inflammatory response biological_process
GO:0070301 cellular response to hydrogen peroxide biological_process
GO:2000277 positive regulation of oxidative phosphorylation uncoupler activity biological_process
GO:0007338 single fertilization biological_process
GO:0006508 proteolysis biological_process
GO:0060548 negative regulation of cell death biological_process
GO:0050821 protein stabilization biological_process
GO:0043523 regulation of neuron apoptotic process biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
K05687 PARK7; protein DJ-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002127 True 1503 mRNA 0.53 6 4095350 4101806

Neighbor

gene id symbol gene type direction distance location
AMCG00002123 pax7a,pax7,pax7b,LOC107708260 coding upstream 37730 4053794 ~ 4057620 (+)
AMCG00002126 pax7 coding upstream 61798 4032134 ~ 4033552 (+)
AMCG00002125 NA coding upstream 74207 4020228 ~ 4021143 (+)
AMCG00002124 pax7a,pax7,LOC107708260,LOC105907504 coding upstream 107507 3983670 ~ 3987843 (+)
AMCG00002119 NA coding upstream 197426 3886487 ~ 3897924 (+)
AMCG00002128 kcnab2,LOC106565914,LOC101463812,LOC102294726,LOC107701994,LOC108231619 coding downstream 52740 4154546 ~ 4154923 (+)
AMCG00002129 LOC108434650,LOC107672035,LOC107706553,LOC107592856,LOC107701994 coding downstream 73826 4175632 ~ 4175847 (+)
AMCG00002130 kcnab2a,LOC108431628,LOC108255041 coding downstream 90854 4192660 ~ 4219877 (+)
AMCG00002135 NA coding downstream 452872 4554678 ~ 4557375 (+)
AMCG00002134 NA coding downstream 461106 4562912 ~ 4569268 (+)
G120974 NA non-coding upstream 7878 4087159 ~ 4087472 (+)
G120961 NA non-coding upstream 154634 3940456 ~ 3940716 (+)
G120928 NA non-coding upstream 303409 3788716 ~ 3791941 (+)
G120827 NA non-coding upstream 592423 3500337 ~ 3502927 (+)
G120823 NA non-coding upstream 601283 3491280 ~ 3494067 (+)
G121044 NA non-coding downstream 479048 4580854 ~ 4581879 (+)
G121045 NA non-coding downstream 480167 4581973 ~ 4582280 (+)
G121114 NA non-coding downstream 647322 4749128 ~ 4752334 (+)
G121176 NA non-coding downstream 1099596 5201402 ~ 5202462 (+)
G121178 dhrs3 non-coding downstream 1101043 5202849 ~ 5204614 (+)
AMCG00002098 NA other upstream 553173 3533814 ~ 3542177 (+)
G120742 NA other upstream 1135875 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 1241223 2852154 ~ 2854127 (+)
G120518 NA other upstream 2154534 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 3102586 682670 ~ 992764 (+)
AMCG00002152 NA other downstream 1117024 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 2484848 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 3291994 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 4636965 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 5742399 9844205 ~ 9851312 (+)

Expression


Co-expression Network