AMCG00002131


Basic Information

Item Value
gene id AMCG00002131
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4220002 ~ 4253397 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002131
ATGGCCAAAAGTCACCTCCTTCACGTAAGTCCTCACATCTCCTCGGTGGGGCAGATGAGACGGTACAGTGCGGGCAGCAGGATGGACGAACAGAGGTGCACCCTCCCACCTCCTCTCAAAAGGGAAGAAGACTACATCCCTTACCCCAGTGTCCACGAGGTACTGGCCCGCCAAAGCCCATTCCCCCTGATCCTGCTGCCCCAGTTCGGCGGGTACTGGATCGAAGGCACCAATCACCAGCTCAACAGCCCCCCCGACTCCGAGCAGCTGCTGTCGCCCACGTCCCGCGCCAAGCTGGAGTGCAACACCCTCGCCAAGATCTATAGGAAGCACTTTCTGGGCAAGGAACACTTTAACTACTACTCCATGGACGCTGCGCTGGGCCACCTGGTGTTCTCCATGAAGTATGATGTGATCGGGGATCAGGAGCACCTGCGCCTGCTGCTCAGgacGAGGATGAAAACGTATCATGACGTGATCCCTATATCCTGCCTCACGGAGTTTCCCAATGTTGTGCAGATGGCCAAGCTGGTGTGTGAAGAGGTGAACGTGGACCGCTTTTACCCCGTCTTATACCCGAAGGCGTCGCGCCTCGTCGTCACCTTCGATGAACACGTCATCAGCAACAACTTCAAGTTCGGAGTTATCTATCAGAAGTTCGGGCAGTTCCTGGAGCTGCTGGGACACAAGATCGACCTGCATGACTTCAAAGGTTTCCGAGGCGGCCTGGACGTGACCCACGGGCAGACGGGCACCGAGTCGGTCTACCACAACTTCCGCAACAAGGAGATCATGTTCCACGTTTCCACCAAGCTGCCCTACACTGAGGGCGACACGCAGCAGGTCCTGCTGCCCGCTCTGCTCCCGTTGAAGTCGAATTCGGGACTGAATGCCGTGCCAGAGCTTGGCTTCGACGAGAACCACAAACGTGGAATGGGATATCCGAGATGCGGACGGCTGTATTTGCGAGGGAAAGTTGTGCCTCAGAAAGAGCTTCTGCACAGCCTTCCCTGCACACGCGTGTGCGGCTCCGGGTGTCAACCGTGTTTCTCGTTGCAGCTCCAGAGGAAGCGGCACATAGGGAACGACATCGTGGCCATCGTGTTCCAGGACGAGAGCACGCCCTTCGTGCCCGACATGATCGCCTCCAACTTCCTGCACGCCTACATCGTGGTGCAGGTGGAGAACGCCTGCTCGGACAACACCTTCTACAAGGTGTCAGTGACCGCCAGAGATGACGTGCCTTTCTTTGGGCCTACCCTCCCAGACCCGGCCATCTTCAAAAAGgagCGCACGCGCACCGCCCTGCTGGAGACGCTGTACGAGGAGCTGCACATCAACAGCCAGTCCATGATGGGCATTGGCGCAGACGACGACAAGCTGGAGAACGGGGGCGGAGGGGGCGGGGGCTTCTTCGAGTCCTTCAAGCGGGTGATCCGCAGCAGAAGCCAGTCAATGGACGCCATGGGCCTCAGTAACAAGAAGCAAAACACAGTCTCCACTAGTCACAGCGGCAGCTTTTCCCACAATCCTCCAGAGACCCCCAAAACCCCTGGGATATCGTTGATAATCCCGGGGAAGAGCCCCACCAGGAAGAAGTCCGGTCCCTTCAGCTCTCGGAGGAGCAGCGCCATCGGCATCGAGAACATCCAGGAGGTGCAGGAGAGGAGGGACAGGCTGCTTCTATGCACGTCTCTTCCCAGCATCAGCCTGAAGAACATCAGGCTCACCGTGGACTTCTCCAACAGGGAATGCTCCCCCAGCACACAGAAGACCCCCGACAGTGGACACGTGTCCCAGGAGCCCAAGTCGGAGAATTCATCCAATCAGAGCTCACCTGAGGTTCCCACTACAAAGAACAGGGCTCCCTCCATCCCAGAGGTCCAGGACTTGTCCCGCTCCTCTTCCAACGCCAGCAGTTTCGCCAGTGTGGTGGAGGAGAACGAAGCCATCGAGGACTACGACACGGGCATGgaGAGCCTGTCTTCGGCAGGGACGCCCCACAAGCGGGACTCCTTTACCTACAGCACGTGGCTGGAGGACAGTGTGAGCAGCACCAGCCTGCCGAGCAGAGGCAGCTCCCCGGCTCCCTCCAGGGCCCCGCAGCCCGAGGTGGGGAAGGGCTCCGAGCCGGCCCGGCCCGAGATCCGCATCAAGCTGGAGAAGCCGCAGGATCAGAAGTCGTCCTCGCATTCCCATAAGAAACACACCCTCCAGGAGATGAGACGGGCACGGGCGTTTGCCACCACCAccgaggacgaggacgaggacgagcCCAGCCCGCCGGCAGGCTTGTGAGGCCCACCCTTGCCGCTCTGCTCCAGTGGTGGTCAGCACTTCTCTCAGCAGCGGCAGTGGGGGGGCCCGGCGCGGTGGACCTGCGACGGCTGACCTcatcccacccacccccacacatCCCACTCCCCGGCAGCCCTGCAGGCCCGGAGGACGAGGCGCCGCCTCCACGCGGGAAGGACATTGATttgcactgtgtttgtgttttattcatctGCCTGTccgtctatctgtctgtctctttctctgtccgGTCACTTTGTCTCGCATGTTTATTTCCCCCATCCGCGGGGTTCGCCAGTGACGGGCATTTCTGTCTCGCCTCCTCGCTCGACACACACAACTTTAGTTGCATTGAAGGGAGGGATGAAGCAGGGATCGGGAAACAGAGCTTAGTTCTCTGTGGAAGGTATTGTCATGAAAATGGTATTGACTGACATGTCTCGACGCACGAGAGACTTTTCTCTGAGGGGCATCGCTGGACTCTCGTCAAGATGCTCACGATGGGAAAGCTGACCTGTTTAACCGTTCAGCGCAACCGTTCAGAAAAGAGAGAACGATTGAAAACCGCAGTTTAGGACGAATGAGTGACCTAGATATACGTGCAGTTCGGTAAACGTCCACACCATTCACTTCCAAATGTCTCTGCTTCCTCTCCCTTCCTTTCTGACAACTCCATCACGATTCTGTAAAtactttattgatttatcttcAGGAAACGAGTCGAGCTGGTGTGTTGAGGCCGAGTAATCCTGCCCGTCTGAACCGGTCTCTGTGAAACACTCGGGTTTCCACCCACGCCTGAACACTTTAAAAAGCAACAGGTGACGGCCGCGACTCGGGCCGGAGTTTCTGTGCAGATAGGCCATGTCACTGGAGAATAAACCAAAGTTCAGACCCTGGGGTTGAGGACAGGGACTGAGATTTCTTACAGGAGTTTCAGCCACGTTCTCCTTCTAGAAAACCTAATCGGCATCCTCCTTAATCCAGTGTACAAGACACGGCCAGTATAACTTTAAAACCCGTGCTGTCCGCTCTGCAGCTCCGTGCGCCCACCAGACCTCTGGGGGGTCCGGTCCTCTCCAGCGTCCCCCCAGTGTCCGGGGCGCACATCGCACGagcatttctttcttcttcttcttctataaTTGAAGTCTATAGTAGCTAGATGATTGTTGTACatacagagagaaaagaaaaacctatTTATTGTCGTGTGTCCATTGAAACGGGACGGCGGGGTCTCAGTCGGTCAGAACTGATGACACTAGAAGGAATGTAACGGACCGCCTGTCCGGCGCCGCCGTGCCGCGCGGTGATGCGGAGGGGCTCCCGGCTCACCGTCAGTAGTGTGCTTTGTTCAGGAATCTGTACTTTAATTTCGTTTGTgaacttttcatttttctggATGTATATATTACTGAAGATCTGATGTTGTGTGTTAAGTTTTATTAACCAGCTGCCCACCTGGCATCAGGGCCAGATGTTTGTGTAAAAGATTCTCCATTGATAAGATATCGGTGCCAGTAAGAAAAACTATTCTCAAAGCCGATCACCAGGCAGgcttcatatttaatatatagctGTTAATTACCTGAAGTTTTATGGAAAGAATTTCATACCGGCTCTGCAAAGGACTGGGTGCTTATTTATTGAAAAGAATCTGTACTTTGATCGTTTTTGTTTCCTCCTCAAACAACAGgcatctgtgttgtgttggtaAATTATCTGGTTGCCTTTTGGgtccatttttaaaatatgccaaGAATTCTATGTGAAATATTTCAGAGGCTTAAATAAGTTGAACACAACTGTGCactaaatcaatataaaaggtGACGCTTATACTGTGAAAATGACTTAACAGTTGCCTTTTAAACACAGGAAGAGTGCATTTCCGCTGCATTTAGGAACGGTACGATACAGAGGAGACGCTTCTCCAGTGGAGCAGCCGTGCAGGCTCCGGGTCGGGGTGCGATTAAGTTCTCCTGCGGTTTCAGGGCGGTTTCCTCCGAGTCGCAGCGCCGAGGACACGCTGTGTACCAGAGGAAAGGCTTCTCTCTCTGACCACAGCGCTGTGGTTTAACGCGGTTTATTTCTCtccagtgtttctgtgtgttgcttttcttttacgAACTGACCCGTCCCTGCTAGGGGCACCTGTAGCGTGTGTTGGACTGAATGAGTTGGACATGTTTAAGATGTACGTCCTTCAATGATTGGAGTCGAAGTGTATAAAAGTGACGCAGTTGTGAATGCAACAGTGTATATAAAGACAAGAGCAGCGATGAGCGGTTAGTCCTGCAGCGCAGAGGGTCCCACCCTGGTCCTGAGGAGCCCaagtcctgctggtttttgttccaaccgcgttctcaatgacttaattgaaccttaattgaagtaacaatctgctatTGAAAGAGTTTGTTCCTGAagaagttctttatacaattctatacccgtttaaaataatgacaaggCTCTGATTCAGGACattattagttcagttaagtcattgagagctgggttggagtaacagggtaggggctcctgcAGGACCAGCGTGGAGAACAAGTGCAGATTGAGACATTGCACTTTGACTGGCCGATAGTGATCTTCTCTACAGGACTTCACACAGTGCATCGGTCTCATTAAAAGCATTCAAATTCAACTGGaaacaataacagcagcacCTTCAGTACAACGCTGTGGCACGTGGAGAAACGGGAGAGGAATAAACCGCTTTAAGTCGCTTGTCAAAGGGAGGAGGCAGTTTTAACAGAACCGCACCCCCACGGCAGATGGAAATCCGGGTGGCTTCTGCGGTGAAGCTGTCGCTGACGGCTCATTGTCCAGCTTTACGATTTCTACCCCAGCGGTGTCACGCACGTCCTCGTCAAGCGCCTGTGCTGGTCCTCCTGTGCTCGTGTCCTCGGTTCACTCTGGAGATTTAAATCCAATAAAGCACAAGATCTTTCGCAGACAACAGTCTCGTGTTGTTCTACAGACAGTTAAAAACCACAGATGTGCTGAGTTGAAatgattgtatttgtgttcCATTGAATATCAAACGCTAAAGTAAGCTCTTGTAAGAAACTCCTATTTGTAAATATggctttttttgtaaatatgcccaagattaaaataaatccaat

Function

GO: NA

KEGG:

id description
K17700 RAP1GAP, RAPGAP; RAP1 GTPase activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002131 True 5450 mRNA 0.53 23 4220002 4253397

Neighbor

gene id symbol gene type direction distance location
AMCG00002120 mrps16 coding downstream 273447 3945137 ~ 3946555 (-)
AMCG00002122 NA coding downstream 299661 3919233 ~ 3920341 (-)
AMCG00002121 NA coding downstream 301815 3911198 ~ 3918187 (-)
AMCG00002117 NA coding downstream 385175 3826176 ~ 3834827 (-)
AMCG00002118 NA coding downstream 395832 3817822 ~ 3824170 (-)
AMCG00002132 glut1a,LOC106583009,LOC106565867,LOC107569806,LOC107666081,LOC107549315 coding upstream 160885 4414282 ~ 4423276 (-)
AMCG00002136 NA coding upstream 317579 4570976 ~ 4579172 (-)
AMCG00002139 NA coding upstream 340755 4594152 ~ 4600114 (-)
AMCG00002138 NA coding upstream 349009 4602406 ~ 4636492 (-)
AMCG00002137 NA coding upstream 397898 4651295 ~ 4673352 (-)
G120975 NA non-coding downstream 132584 4087108 ~ 4087418 (-)
G120914 NA non-coding downstream 515638 3700492 ~ 3704364 (-)
G120853 NA non-coding downstream 679176 3538762 ~ 3540826 (-)
G120849 NA non-coding downstream 683477 3535822 ~ 3536525 (-)
G120842 NA non-coding downstream 717074 3500281 ~ 3502928 (-)
G121039 NA non-coding upstream 314042 4567439 ~ 4569294 (-)
G121111 NA non-coding upstream 463195 4716592 ~ 4722181 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding upstream 857205 5110602 ~ 5116017 (-)
G121152 NA non-coding upstream 874641 5128038 ~ 5137006 (-)
G121188 NA non-coding upstream 974277 5227674 ~ 5228131 (-)
G120993 NA other downstream 125 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 433458 3784236 ~ 3786544 (-)
G120907 NA other downstream 503750 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 753541 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 1033649 3173505 ~ 3186353 (-)
AMCG00002167 NA other upstream 1722328 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 3573244 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 5355353 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 5504028 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 5577122 9830519 ~ 9833224 (-)

Expression


Co-expression Network