AMCG00002132 (glut1a,LOC106583009,LOC106565867,LOC107569806,LOC107666081,LOC107549315)


Basic Information

Item Value
gene id AMCG00002132
gene name glut1a,LOC106583009,LOC106565867,LOC107569806,LOC107666081,LOC107549315
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4414282 ~ 4423276 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002132
ATGCACtcgtatgatttattttttctttcttttcctttttttttccttcagcaaGTGACATTTCAGCTGATGATGGCAGTAGGAGCAGCCGTGATTGGCTCCCTGCAGTTTGGGTACAACACTGGAGTGATCAACGCACCGCAGAAGATCATAGAGACGTTCTACAACGAGACGTGGTATGACCGCTATAATGAGACGATCTCAGAGACCACTCTCACCACACTGTGGTCCCTCTCTGTTGCCATCTTCTCGGTCGGTGGGATTTTCGGCTCCTTCTCCGTGGGGCTTTTCGTCAACCGCTTTGGCAGGAGGAACTCCATGCTCATGGCCAACGTCCTTGCCTTACTTGCAGCCGTCCTCATGGGCTTCTCCAAGTTGGCCGCCTCGTGGGAGATGCTGATCATTGGCCGCTTTGTCGTAGGTCTGTACTCCGGCCTGTCCACCGGCTTCGTGCCCATGTACGTGGGCGAGATCGCTCCCACTGCCCTCCGGGGGGCACTGGGCACCCTCCATCAGCTGGGCATCGTCATTGGCATCCTCATGGCTCAGATCTTCGGGATGGAAGCGATCATGGGGAATGCCTCTCTGTGGCCCATCTTGCTCGGCTTCACCTTCATCCCTGCTGTGGTGCAGATCATCACCCTGCCCTTCTGCCCCGAGAGCCCCCGTTTCCTGCTCATCAACCGCAACGAGGAGAACAAGGCTAAGAGCGTGCTCAAGAAGCTGCGCGGCACGACGGACGTGAGCGCTGACATGCAGGAGATGAAGGAGGAGAGCCGGCAGATGATGCGGGAGAAGAAGGTGACCATCCCCGAGCTGTTCCGCTCGCCGCTGTACCGGCAGCCCATCCTCATCGCCATCGTGCTGCAGCTGTCCCAACAGCTGTCGGGCATCAATGCTGTGTTCTACTACTCCACCAGCATCTTTGAGAAGGCCGGAGTGGCGCAGCCCGTCTACGCCACCATTGGCGCCGGCGTGGTCAACACCGCTTTCACCGTGGTGTCGTTGTTTGTGGTGGAGCGAGCTGGCCGCAGGACTCTGCACATGGTTGGTCTGATGGGCATGGCTGGCTCTGCTATTCTCATGACCATCGCTTTGGCCCTCCTGGACAACCTGCCCTGGATGTCCTATGTGAGCATCGTGGCGATCTTTGGCTTCGTGGCGTTCTTCGAGATCGGGCCCGGCCCCATCCCCTGGTTCATCGTGGCCGAGCTGTTTAGCCAGGGTCCGCGGCCTGCTGCCTTCGCCGTGGCCGGCTTCTCCAACTGGACGGCCAACTTCATCGTGGGCATGTGCTTCCAATACGTCCTGCAATTGTGTGGACCCTACGTCTTCGTGATCTTCACCGTCCTGCTGGTGATCTTCTTCATCTTCACCTACTTCAAGGTCCCGGAGACCAAGGGCCGAACCTTCGACGAGATCTCGGCGGGCTTCCGGCAGGGCGCCGGCTCCAGCCCGGCGGAGAAACACTCCCCCGAGGAGCTCAATAGCCTGGGCGCAGACTCCCAGCTCTAAAGCAGCGCCGCCATGCCGGGGAGCGACTCATGGACTGTGTGTGAACGCTCGTGCATTCTACTATAAACTGACACACTGGTTGTGACCACATTTCCAGCTTTTTTAGGGGTAGGGGCTTTGGTCCAGACTGGGGTCTTTGTTTgaagaaatacattttatttttttaccgtAGGGAAGTTCCGGCTGATGTGAATAGTCTGTCCCATGATCTTTTCCTGAAATTTCATCGAGTGCTGCTGTTCCACCTCAGCAGCGACTTGAGTGTTTGTACCGGGCAGTCAGGATGTCACGTAGAATGAATGGTCTGTTGACTAGTGCTGGGGAGGACGGGTCTGTCCGTTTCCCCCGTCAGTTCATGGACCATTCCCCACGATGCCCAGGTGTCCTTCAGCACCGAGATCTGAACTCTGCTGGCCCGCCGGCTGGGCTCAGACCAGTTTCGAGCAGCTTTGGGGTCAGTGTTTCTGTCACGGGAGTATGTTGGCCGCTAATGGCCGCCTGCAGGGCCAGTAAGAGTCTATGTAGGCTCCGCTACACAGATGAAGCAATAAACAACAATAGCAATAACAATAGGTTTGTTTCCACCCAACCAAATAAGTTCCCCAGCTTTATGAGAAGAGGTGCCATCAATACTTCCTCGCTAATAGATTATCCATCGCATGGGGATCACTGGGACCGTGCTAAAGTTCGTCAGAAATATTGGAATTCAAATTTCAAAAAGTCGCAGGAATTGCTGGTTCCTTCTTCCAGTCACAAGAAGGAAAGTTTTAGTTTCGCTTCAAGAATCGTGTCGTGTACATTTATAGTTTTTACAAAACacagtttgacattttgttCCTGGTACGGACTTCgatgcttttaatatttaaaattaatttttaaataaatctgatcatgaactttttttatatattgtttctgaaAAACTAGCTTGGCTTCCTGAAGTTAAAATGGAGTTACTGACTGCAAAATGGCTGTTGGAGCCAGACTAGATGTTTTTAGGAATATTTTTTCCAGTGTGTATAATTTTCATTATCGCACCATGAGACGAGACTACCTGTTTTCAGTCCTAACGGTCAATGAGATTGGATTTGTTTATGAGGAAAATACTCTCCCGGTTTGTAGTGGAATTCCTGTTTCTTCACAAAACTAAAGTTCTTCTAAATCTACTGTGTTTTTGGATGAATATCCATATCGAATATCTGCGGTGTAATCAgaactatttatatattcatttaaacatgtatagaaaggtgtattgtttttgttttttaactgagAGACTCTCAGTCTGAGATGTCAATAAGGTTGTGTTACAGCAGGATTGTCTTGACCTCCTGCCTTGGTCAGCCGTCGTGTGTGTTTGCGAGTCGCAACATTGTGGTGTAAATGAAGCCGGGACTCTGGTGGTCGAACGGGGTAGAAGCAGCGCAGAACGAGCGCCCCGACCCGAGAGAGCGCTCGCGTTGCGCGGCACTATGACTACTGAACCCAACCCTCGTTTTGATAAATCTGTGTAAGCGTTTGTCAATGAATGTGCAATTAAACATCTGTAAGCGTAAACCCGGTGACAACCTAGAATTGGGAAATCCTCCTATATTGCATCACGTGACACCACTGGGGTTTCTCCCACGCTTGTCACTGAGCGACAGCCGGCCCGTCACCTAAACCGAAGCATCGGCACGGCGGAGAGAATGAATGTCAGCCTTCTGATCCAGAGAGGGCAGCAGGAGGaatatatagatctatatattCTAGAACCGAGGGACCAAACTGAATGTggcttccatttttttttttttNNNNNNNNNNATAATTTACATTCTGGAGTCTCTTTTAAACCTTCGAATGTCCGACCGTATTGCAGCCCCGGTCATCCATCTCCCCGCGGCTGTCGGACGAGATCAGCTCAAGATAGGGAAATCGCAGGCTGCTCCGACTTCCGGCAGTGGCTTCCTCTTCCACTCCAGCTCCACTGCAAGCAGAATAGTTTAATTGTTTATCAGCGCACTTTACTGCCTGAAGCACCCGTTACCTTCCTGTTTACCCAGAGTATTGTCGtgcgtttttgttttcttcagcgTCACATACTGATGTATACGGATACCAGTTGCATATTGTGCACTGAGCATCACAGTCGGGTTTCTGCTCGTATGTCAACCACTGACAGACCGGTATTCAGTGACTTTCTGAGTATTGACATCATTATTATCgctttgttttctgtatccTTAGAGTTCAGTGTTTGTTGGCCCTTGTGAAATATGTAAAGAACAGAGGCATGTTCTAGCCTGCAGATTCCAATAACCGTCGACCTTCTGTCCTTCGAGAGGAGAGGGGTCGCCGATCGCTCAGCGGGGGTCAGGCGAAGGGACAATCATTCAGGAATGGGATTGTGGGAGAAACCCATCTTTGCGAAAGGACCGGGCTTCTTCCAATCACCCATCTGCTTTTCATCACCAGATTGTTTTCGCCCCTGGTGTGTCCTGAGATCAGACCTGTAATAAAAGCAACCTGTATGTGTGTCCCATTGTCCTGCAGTGTCCATGAGAGGGAACACTGGACAGTCCAACACTGTATTCTTCCTGTCAGTCAAACAAACGTGTACAAAACCGGATACATGCACCAAAGTGTTTTCGTTTACATCTGGACCCACAAACTGGTTGTTCATACTACATTATTCCTAGATGTAGCACCTACAGATGTGTTCAATCATCCGTTTTTCAGGTCAAAACGTCAGTAGACCTCTCACAGCGAGGTTATCCGAGATCCGGAGGCTTCGTTTCCGAACTCCCTTAAAGGTTTGAGGCTAAACGCACTGTTACCCCTGTCCAAAATCTCACTCCTTGCCCTGACTAGTTGTACACTCTAGTATCAATTTCCAATGTGTGGACAGATGTTGTTGCCATCTGTGCTGTGAGCAGTAGTAAAGATTTGGTCcaattctgtgtgtgtgggaggacCCCACATTTGTTTGGAAACCTATTCCAAAAATCCATTCAAAAATGTTAGCAAAAAAATTAACTTTATCACTGCCAAGTGGTATCGAGTTTGGTCCAGTAAATCACTGGTGCATGTCTGGGGTTTTTACATACGAATGAATTGTAATCCACGGCAAACACTGAAAACAGTTgctgactgaagaagaaaaaagaaattgcttttcttttgtgtatagttataaatatttataattgtttttttgtttatatatatatattattgttgaCTACAGCTCTTATGTAGTCAAGAGAGAAGTACTGTAAATAGTAGAATCCTGTATCCACACATGTATAATATGAAAAGACATAACATGACCTCTAGTTTATAGAGCACTTTTAAGCGAGATAACTTGTATATGGACATTTCTTTTGTACAGCACTGTTTTCATATAGAGCTTTCTGATGCACCACAGTTATGCCTTTCATAGTCAAATAAAGCTGCTAGTCAGGCAGGGAAActatatatttagtttgttttttaatcggACTAGAAGCTTTATTTAAGTATATACAAATAGTACACGCAATTTCCCCAGCTTTCACAGGTACCAGTGGCAGATACAActatttattagtttaatttattagtgTCTTTGAGTAAAAAACTTAAATCTGTGTGTtcaggggagggagggaagcaggtttttattgttttttttgcaagtgTTGTGCCAAGCCTGGCTGCTGACCTGAGAGACTTGTATTCTTCTTTTAGAAGATTATTACGAGTGCGTGTttgaatcaataaaataca

Function

NR:

description
PREDICTED: solute carrier family 2, facilitated glucose transporter member 1-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0055056 D-glucose transmembrane transporter activity molecular_function

KEGG:

id description
K07299 SLC2A1, GLUT1; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002132 True 5271 mRNA 0.47 10 4414282 4423276

Neighbor

gene id symbol gene type direction distance location
AMCG00002131 NA coding downstream 160885 4220002 ~ 4253397 (-)
AMCG00002120 mrps16 coding downstream 467727 3945137 ~ 3946555 (-)
AMCG00002122 NA coding downstream 493941 3919233 ~ 3920341 (-)
AMCG00002121 NA coding downstream 496095 3911198 ~ 3918187 (-)
AMCG00002117 NA coding downstream 579455 3826176 ~ 3834827 (-)
AMCG00002136 NA coding upstream 147700 4570976 ~ 4579172 (-)
AMCG00002139 NA coding upstream 170876 4594152 ~ 4600114 (-)
AMCG00002138 NA coding upstream 179130 4602406 ~ 4636492 (-)
AMCG00002137 NA coding upstream 228019 4651295 ~ 4673352 (-)
AMCG00002141 NA coding upstream 318213 4741489 ~ 4747439 (-)
G120975 NA non-coding downstream 326864 4087108 ~ 4087418 (-)
G120914 NA non-coding downstream 709918 3700492 ~ 3704364 (-)
G120853 NA non-coding downstream 873456 3538762 ~ 3540826 (-)
G120849 NA non-coding downstream 877757 3535822 ~ 3536525 (-)
G120842 NA non-coding downstream 911354 3500281 ~ 3502928 (-)
G121039 NA non-coding upstream 144163 4567439 ~ 4569294 (-)
G121111 NA non-coding upstream 293316 4716592 ~ 4722181 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding upstream 687326 5110602 ~ 5116017 (-)
G121152 NA non-coding upstream 704762 5128038 ~ 5137006 (-)
G121188 NA non-coding upstream 804398 5227674 ~ 5228131 (-)
G120993 NA other downstream 194405 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 627738 3784236 ~ 3786544 (-)
G120907 NA other downstream 698030 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 947821 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 1227929 3173505 ~ 3186353 (-)
AMCG00002167 NA other upstream 1552449 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 3403365 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 5185474 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 5334149 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 5407243 9830519 ~ 9833224 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location