AMCG00002133


Basic Information

Item Value
gene id AMCG00002133
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4584435 ~ 4586858 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002133
ATGGCTCACGCTCTGAGGAGAGTGTCTTTCTGCACCTGCTGCCCCTCTGAGGCCCAGTTTGCCTTCGTCTCCCATAACCCCGGCAGCCTGGACAGCCAACTCTACTGCCACCTGTTCAAGACCAGGCACACCAGGGCGGCCCGCGTCATGAACCTGCTGCTATGCCGCTGCTTCCAGCTGTCCTACCTCCAGAAGCACCCAGAGGTGGCGGAGGTGCAGGTGGAGAGTCCGCTGCCCGCCCGGCCACCCTCCCTCCTCAACCAGGGCTTCCCGCTCAGCGTCAGCGCCCTGGTGTCCTTCCGCCGAGCACCCACCCAGGGCGGCCTGCTCCCCGGAGACAAGGACTCCTCTCCCCAGAGTGATGAGCAGCTGAGCAGCCCTGAGGAGAACATGGTCTCCTCTCCCACGCTGGTGCGCAAGAAGGCCATCCGGAACAAAGTGCTGCGCTCCGGCGCGTACCGGTCCTTCACATACACCTCCCACACGGCCCGGCCGGTTTGA

Function

GO: NA

KEGG:

id description
K23701 SH2D5; SH2 domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002133 True 501 mRNA 0.65 4 4584435 4586858

Neighbor

gene id symbol gene type direction distance location
AMCG00002134 NA coding upstream 15167 4562912 ~ 4569268 (+)
AMCG00002135 NA coding upstream 27060 4554678 ~ 4557375 (+)
AMCG00002130 kcnab2a,LOC108431628,LOC108255041 coding upstream 364558 4192660 ~ 4219877 (+)
AMCG00002129 LOC108434650,LOC107672035,LOC107706553,LOC107592856,LOC107701994 coding upstream 408588 4175632 ~ 4175847 (+)
AMCG00002128 kcnab2,LOC106565914,LOC101463812,LOC102294726,LOC107701994,LOC108231619 coding upstream 429512 4154546 ~ 4154923 (+)
AMCG00002140 LOC107727752 coding downstream 104108 4690966 ~ 4721931 (+)
AMCG00002143 NA coding downstream 201654 4788512 ~ 4791668 (+)
AMCG00002145 LOC102295218,LOC102203423,LOC101487531,LOC102781222 coding downstream 376196 4963054 ~ 4967720 (+)
AMCG00002146 ephb2 coding downstream 410687 4997545 ~ 5000508 (+)
AMCG00002148 ephb2,LOC104917933,LOC108439490,LOC102781222 coding downstream 427892 5014750 ~ 5022684 (+)
G121045 NA non-coding upstream 2155 4581973 ~ 4582280 (+)
G121044 NA non-coding upstream 2556 4580854 ~ 4581879 (+)
G120974 NA non-coding upstream 496963 4087159 ~ 4087472 (+)
G120961 NA non-coding upstream 643719 3940456 ~ 3940716 (+)
G120928 NA non-coding upstream 792494 3788716 ~ 3791941 (+)
G121114 NA non-coding downstream 162270 4749128 ~ 4752334 (+)
G121176 NA non-coding downstream 614544 5201402 ~ 5202462 (+)
G121178 dhrs3 non-coding downstream 615991 5202849 ~ 5204614 (+)
G121187 NA non-coding downstream 640816 5227674 ~ 5228099 (+)
G121198 NA non-coding downstream 656851 5243709 ~ 5275923 (+)
AMCG00002098 NA other upstream 1042258 3533814 ~ 3542177 (+)
G120742 NA other upstream 1624960 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 1730308 2852154 ~ 2854127 (+)
G120518 NA other upstream 2643619 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 3591671 682670 ~ 992764 (+)
AMCG00002152 NA other downstream 631972 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 1999796 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 2806942 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 4151913 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 5257347 9844205 ~ 9851312 (+)

Expression


Co-expression Network