AMCG00002134


Basic Information

Item Value
gene id AMCG00002134
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4562912 ~ 4569268 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002134
atgtcatcACAAGTCAAAAGAGTGCCGCTTGGAATAAGTAAAGGCACCGCCGAGAGGGTGAATGCCAAGCCGGGACCAGGCACCGCTCCAGCCATGACCTCAGGAAATGGGAACAACGCGCCCACTGTGACAGGCAGCACCCCTCAGAACGGGGAGAACAAGCCCCCGCAGGCCATCGTGAAACCACAGATCCTCACGCACGTCATCGAGGGCTTCGTCATCCAGGAGGGAGCCGAGCCGTTCCCTGTGAGTCCCCTAAGTGTGCGCCCGTGGCTGGCAACGCCGGCTCCCCTGCCTCACCGCTGCGGAGCCAGAGCAAAACAACCCCCCCAGGGCCTGAGCAACATGCTGCCAGGCAGTGTGGACCTGTGCACAGAGCCGTGGGGGGGCTTGGACTCGGACCACCTCCCAAAACAGACTGGGAGGAGGGTGGGGCGCCCCCCATTGCTCATCGAAAACctgaagaaacagaaacagcagctGCAGTCCGATCCCGAGAAGACGCCCCAGAGCAACCCGCCCAACACGACCGACTCCGAGATGGAGGATCTCTCGCAGCAAGAACTGAAAGACCAAGAGGAGGACGAACCCAAGCTGAAGTGTGAGCTGTGCGGCCGGGTGGACTTCGCTTACAAGTTTAAGAGGTCGAAGAGGTTCTGTTCCATGGCCTGTGCCAAGAGGTATAATGTCGGTTGTACCAAACGGGTGGGCCTGTTCCATCCAGACAGGAGTAAAAACACAGCCAAATCAGACGGGCCAAAACACCGCAGGCGGAGGTCGCGCAAAGGCAGCCTGCAGAGTCTGAACAAGGAGGTCAAGAAACAGCCTTCCACACCCCTCCAGACGCTGGGTGGCTTGATGTCCTCCCCACTCCCCTCCCACCCAAGCCAGGGCGAGTCCAGCCAGTGCTCGGACATCTCCAGCTACGAGgagcccccctcccctctctcggCGGCCAGCTCCGGGGCACCCAGGCACCAGGGCGACCGGGGGTCAGATGGCCAGGAGGGCCACGGCAGAGAGCTGCCCCTCCACGCGCAGCACTTCCAGTCCAGCGACCCCACCAAGTGGAACGTAGAGGATGTGTACAAGTTCATCCGCTCCCTGCCAGGCTGCCAGGAGATAGCCGACGAGTTCCGCTCGCAGGAGATCGACGGCCAGGCCATGCTGCTGCTCAAGGAGGATCATCTCATGAGCGCCATGAACATCAAGCTGGGCCCCGCGCTCAAGATCTACGCCCGGATCAGCATGCTGAAGGACTCCTAGCCGCGCCTGGGGTGGGGGGCGAGATCGGCCACCTCCCTCACAGCGCAAAAATGGCATCCGAACAAGTGAGGTGGTCCTGGCACCGGCGCTCACGCCCAGACTCTGAGATCTGCACGGCCCACTGCGGCACAAAAACCTCACCCGGGTCAGGAGGGCTtcccattgtgtgtgtgaacgGTGCTTCCCTTTTTAGGGTCCCGGAGAGGCCCTCGTGTTTGGATGACCCTGTAGTGGTGACGTTATGTGGATGGAAATACGGGAGTGCACTCAACACCTTCAGGGGCTTCTGTGACGGCACAAAGGCACGCTGGAGTCACCGAAACTGTTCATAGCTACATTTTGATGGATGTCCAGCAATGAGAACTTTTTTCTCATTAGGAAATGTGAATAGTCAAGCCATTACCTGTATGTCCTTCGCATCCAGTGGtgttttggatttattttattattattttttaaacgtatatttatattttgatttctaagACACGGGGTTTCATTGTTTATACACGAgaacttttattattaatgataagcTGAATCATTTTCAGCAGGCCAAGGTTGGCCTGGTAAATTGGTGCTAGTTTACAGAGTCCTGGTCCAGGCGAAGTGAACGTTCTCTGTCAGGGCCctgcaaacaataataaaacacttgcaaTGGTGCTTCTGccttactgtacattttaaggGTGCTCATGACGTTTCGGTGATTGGTCTGTTTTCCTTTAAGTGAGGTTTCCACTTCCCACAAAGAAGTGAGTCTGCCAGAATGCATGTCAACTACACATTCCTGTCCTTGTTCCTCAATCTCGTTCTCATCACTTTTAATTGTCATTCAAGTGGTCTTCTGTTCACTACGGTCCCTTTCTTACagctcctctcccctcctcttttTCATcaccattttcatttgtgtgttaaatgttttcGTGATTAACGGCTGGTTTCCAAAGACAACGCATCTCATGGCTCTTTCGAagatcagttttttttctttttgttcactGTTCTTTTGACACAATTCAgaataaagataaaaagaaacTCAGAGTCTGTCATTCCCCTTCACTGACTCGCTCAATACAGGCCTGTTCTGTATTTGTCATCTCACTCTATCTTCAAGAAGATATTACAGTTTTAAGTCACCTGATGGGTCATATCACACTTCTGTCACAATTAGATCGGTACTTACATACTGAATGGTTCAAAATGACTATTTTGAGTTAACCGTCCCCTGTGATGACTTTAAGATTAAATTTTACATCAACTTTACAGGTGCGTTTGCCTCAGCTTGCCACAGATCTTAGTTTCCTCTTttcacactgaaaatgaaaaccgaAGCAATGCTGCAATTAAACCGCTGTTAACCAGCTTGGTGTACATACTCAGTACATCCACAGTACATATTCTGTTTTTTGCTGGAATCACTTCTGACTGTGACTTATAACTACGTTGCAAGCATTTCAATACTCATGgaaaaggtttgttttgtaaGCGAGATGAAGGCTGGAGCTCTGAGGTGTCACCGAGTCTATACCGCTAGGGCCCCGAGCCCATCACTGTGTGCGCTAAGGGGTTAGTgtgtcgttttgtttttcatgtatacAACTCTGTTTAAAGTTTGTATTTATCAAAAGAACCGTTTtgtaatataacttttttttttttaacttg

Function

GO: NA

KEGG:

id description
K11457 PHC2, EDR2; polyhomeotic-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002134 True 2940 mRNA 0.51 7 4562912 4569268

Neighbor

gene id symbol gene type direction distance location
AMCG00002135 NA coding upstream 5537 4554678 ~ 4557375 (+)
AMCG00002130 kcnab2a,LOC108431628,LOC108255041 coding upstream 343035 4192660 ~ 4219877 (+)
AMCG00002129 LOC108434650,LOC107672035,LOC107706553,LOC107592856,LOC107701994 coding upstream 387065 4175632 ~ 4175847 (+)
AMCG00002128 kcnab2,LOC106565914,LOC101463812,LOC102294726,LOC107701994,LOC108231619 coding upstream 407989 4154546 ~ 4154923 (+)
AMCG00002127 park7,LOC107657982,LOC107701995 coding upstream 461106 4095350 ~ 4101806 (+)
AMCG00002133 NA coding downstream 15167 4584435 ~ 4586858 (+)
AMCG00002140 LOC107727752 coding downstream 121698 4690966 ~ 4721931 (+)
AMCG00002143 NA coding downstream 219244 4788512 ~ 4791668 (+)
AMCG00002145 LOC102295218,LOC102203423,LOC101487531,LOC102781222 coding downstream 393786 4963054 ~ 4967720 (+)
AMCG00002146 ephb2 coding downstream 428277 4997545 ~ 5000508 (+)
G120974 NA non-coding upstream 475440 4087159 ~ 4087472 (+)
G120961 NA non-coding upstream 622196 3940456 ~ 3940716 (+)
G120928 NA non-coding upstream 770971 3788716 ~ 3791941 (+)
G120827 NA non-coding upstream 1059985 3500337 ~ 3502927 (+)
G120823 NA non-coding upstream 1068845 3491280 ~ 3494067 (+)
G121044 NA non-coding downstream 11586 4580854 ~ 4581879 (+)
G121045 NA non-coding downstream 12705 4581973 ~ 4582280 (+)
G121114 NA non-coding downstream 179860 4749128 ~ 4752334 (+)
G121176 NA non-coding downstream 632134 5201402 ~ 5202462 (+)
G121178 dhrs3 non-coding downstream 633581 5202849 ~ 5204614 (+)
AMCG00002098 NA other upstream 1020735 3533814 ~ 3542177 (+)
G120742 NA other upstream 1603437 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 1708785 2852154 ~ 2854127 (+)
G120518 NA other upstream 2622096 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 3570148 682670 ~ 992764 (+)
AMCG00002152 NA other downstream 649562 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 2017386 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 2824532 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 4169503 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 5274937 9844205 ~ 9851312 (+)

Expression


Co-expression Network