AMCG00002138


Basic Information

Item Value
gene id AMCG00002138
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4602406 ~ 4636492 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002138
aaaaaaatctttttcCATAAGAGAAGCTCAGAGTCCCTTTCACCCAGAACAGCTGTTCCCTTTAACTGTGGCTGAGCAGCGCTGGGTGAACAGGCCGTGCTGAAACAGCATTGTGGATTCTCTCTCCTCGGCAGACACAGCACTGTTTGTCAGGACTATAATTCCGTTTGTGGGGTTTCAGACCAGCGCTGGTAGTTTTTTTTGGGGATTCTTGGCCCAATGCCAGGGAGAGTCTAACGCTCCGGTCTGTGGAGGGGGAGTTGGGAgagaataaaaactgaaataacaggAGGAGAAAAGAGGGAGACCTTCCCATTTCCTTGAAATCATGTGACTTCTCTCCGGCAGCACACTGATTACAGAAACATGCACTTCATGGCTAAGGTTAATGAAGTTCAGCaacccttttttctttttttggtctaGTTTTTAAagtagtaaaatgttttaaaggtgtctggttgtgtttttccattgtgTCATCCATTCtataaatactttacatttcGAAAGAGGATAATTTGTCTTGTCCTGTAACTTCTTACTCATTACTCACGCCTGACAACTCCGGCCTTAacaattcagatttttaaatgGACAAATCAAGATGTTGGTCATAAAGTAATTTTTGAAGAATCgtatatttaattgcataacATTTGTCTAAAGATGCAGAAACAAGATTAATGTTTTAGCAATATTTAAATCGACAGCATAACGTTTCTGTTATCGTGCAATTaatgctgttatttttaaacgTTGCTTCACTTTCTACGTTGTTCTTTTGTAGTCTACTGCAATTTATAAAAGTATTCTTTAAAATTAACAGTttctataaatacatgcattgtatatttaattgcataacATTTATATGCCTAAAGATACAGAAACGTACATGGCATTTGTTATAAATGTGATGAAAGGAGATTTATTTATGAgttttaagaaataatttgAACCGACTTCTAAATCACACTctaaacatttttagaaaatgctTCTTGGATCCATTTAGTCTTTAGGCTGTAGGCCTGACCAACAGACAGAAGAGCTGAGTGAAATTTCCTCTTgtctgttattaatattatttctttgTAGAAAGACTTTTCAGaagatatgtttaaaaaagaaaaatctcacAGGAAAAGATACTAATAAATGAAATGGCAGGTACGTGTAGGTGGTATACATTACATTCTTATACCCTTAATAGAGTTCGAGGGACTCAGGGTTTTGGCTGCATCGTGATGGCTGTAGGCTGCGAATATTCTCAGCTGAATTCAGTGGCTGTGCCAAACGTATTACTGACATATTTTAGTGTTTGCAGCTGTTAATTCTCAAAGATGACTCTTTAGTATGACCCAACTGAATAATTGCAATTATGGcacaattaaatacagtatattaaaggCTTTGACATGCTAAGTCACAGTTCGGGGCTTCATAACACCTAGACTAGGACTTTCTGTTGTCGTCAAACCGGAAAAACTCCCATGTGATGAAACGTTAGCGGACACCAGACCTTTGCGTTCACAATCCTCCGCGCCTCAGATGGGTTCGCTTCCTGCttatatatgcatttgaatGCTTCTCTTGCTGTTTAAATTGCTGTCTTGGCTGCCTTCCCTCTTGTTCCAATGTTTCGCCTTAAGTTGACGCTGTGCCAGAGTTTTCCTTAATGTGTCGCGTCTCAGGATCTCCAGAGTGCAGGCCCCACTCGAGGACCGGATCTTCCCGACGCAGCCTGGAGTCGCCGCCGTCTACAGTGTACCTAGGCCACCTGGCCCTACCTACACAACACACGAAATCACCAAGGGACACCCTAACCTTGCGGCCACGCCGCCCGGGCACGCCTCTTCCCCAGGACTCTCTCAGTCTCCGTACACCTCTGGGCAGAATGCTGGCACCACCCCATTGGTGTATTCTCCCCCGACGCAGCCAATGAACGCACAGCCGCAGAGCCGCCCGtTTGCAACGGGTCCTCGTCCTGCCCACCATCAGttTTTCCAGAGGACCCAGATGCAAACGGCGCGCCCCACCATTCCAAGCAACAGCCCTTCCATTCGGCCGGGATCACAGACCCCCACTGCCGCCGTCTACCCCCCCAACCAGCCCATCATGATGACTATGACCCCCATGCCCTTCCCCTCGCCACAGGCAGCCCAGTACTACATACCCCAGCCGCCCTATCGACACAGCACGCCCTACGTGGGGCCCCCGCAGCAGTATTCGGTTCAGCCACCGGGCCCCAGCACCTTCTACCCTGGTCCGAGCCCTGGAGAGTTCCCCACACCGTATGGGCACCCCTACTACCAAGGGCAGACTGTGTACACCCCTTCTCCACAAATCATAGTGCCTACACCACAGCAACCTCCACCTGccaagagagagaagaaaacaATCCGGATCCGAGACCCCAACCAGGGCGGGAAGGATATCACAGAGGAGATCATGTCCGGAGGGGGGGGGAGCCGGAATCCAACCCCCCCTGTGGGGAGgccctcctccacccccacccccccccagCAGCTGAGCAGCCAGGTCCCCGATCACGGACATGTGATGTACAGTGTGGAGAACACCCAGCTCATCCCTGCGCCAGTGGACTTAAAGCCAGAGGACAAGCCAAAACTGGAGTCAGCGATTCTGAAGTCTTCATCTCCAGGGCTGCGGCTGCCAGACCCCCCTGCTGACAAAAGGGAGGCGGCCAGCCCAGTGCAGGTCCCCCCACCTCCCGAGAAACCAGAGCTTCCCGCCGCCAGCCCAGCCGTGGTCCCGAACCCAACTATGGCCCCTCCGGCACCCGTCGCCAGCCCCAACAAGCCTACGTTGGTGGTGGTGGCAAAGCCGGCCGAGCAGCCTGTCTTGAAGGAAGAGCCCAAGGAGGCTCCCTCGGTTTCCCCTCAGCCCGAGAGCTTGGACCTGGACAGGGCCCTTCCAGAACTGACCAGGAGTCTGTCTGCTTCCCCAGCGCCGGTCATCAAGGAGGTGAACGGGCTCAGCGACAAAGAGGCCACTTCCCCATGCAGCGAATCGGACTTGCCCTCCCAGGAGCCGGTGCCGCTGTCCTCTCCGCCTCAAGCTCCGCCACAGCCTCCACCTCAGCCCCTGGTCTCGAACGCCATCATGGAAGGAAAGGAACCCCCTTCCAGAGAGGTGCGGGCGGACAGCCCCCTGGTCACCCCGGCGGCGGTGCCCCTAGTTGCTGACGTGGCTGTACCTCCTGTGGCCGTGTCCCCCTCGTTTACCACCACTGCTGCTAtcactactactgctgctgctccggctccgcccccccccccaggcctCCTGGCGACCAGTCAGGCGGCAGCGGTGGTGGCCGAGGCCAGGAGACTCTCTCTGGAGTCCACAGATGCCGCCCCCAAACCCAGGCCCGAGGCAGGGGACGCTGTGTTGGAGAAACCAGACCCCCAGCTGCAAGCGAACTCCAGAAGGAGCCCCAATACAGTCGGTCTGAACTggcctgggggtgggggggcactcGAATTGCGAGGGTTATGCCGTAGGGAACGGCCCGAGCCCTGGGAGGAGCTGCTGGCGGAGAAGGCcccggagccggagccggagcccGAGCCCCGCAGCAGCCCCGCGTTGCCAGAGGCGGAGAAGAAGGCGCCCGTCCCGGAGGAGAATGGGGAGCGGGAGCCGGAGCCTGTGAGGAACGGCGCCGAACACGCCTCCGAGACCGAGAGCAGCGACAGCGGGGTCACCGCCGCGGACAAGGAGGGCTCAGCTGGGCCGGCCCCGTTCCTCTTGCGAGAAGCGGAACCCATGGACACGGAGAGCAAGAAGCAGTACGACCGCGAGTTCCTGCTGGGCTTCCAGTTCATGCCCGCCTGCGTGCAGAAACCTGAGGGTTTGCCCCCAATCAGCGATGTGGTGCTCGACAAGTGCATTGACACTACATTCTTGCAGATTAACCAAAACAAGCTGCCCATGAGGCCCCTGGACACAAGGGCCATCTCCCGAGGGCCGGACTTCACCCCCGCCTTCGCTGACTTCGGGCGGCAGGTCTCCGGAGGCCGAGGGGCAGCCCTGCTGAATGTGGGCTCCCGGCGGCCCCAGCCTCGTAAGATCATCACCAACGTGTCTGTGAACGATGAGGTGCAGCTGAAGAAGGCCGAGCACGCCTGGAAGCCCACTCTGAAGAGAGAGGTGCCGGCGGAGGTCCAGGGCGGGGGGAAAACACAGGACCTGTTTCGCAAGGTGCGCAGCATCCTGAACAAACTGACGCCGCAGATGTTCAACCAGCTGATGAAGCAGGTGACGGAGCTGACCATCGACACCGAGGAGCGCCTCAAGGGGGTCATCGACCTGGTGTTTGAGAAGGCCATTGACGAGCCCAGCTTCTCCGTGGCCTACGCCAACATGTGCCGCTGTCTGGCCACGCTCAAGGTGCCCATGGCCGATAAGCCGACCGGTACAGTGAACTTCCGCAAGCTGCTGCTCAACCGCTGCCAGAAGGAGTTCGAGAGGGACAAGGTGGATGACGTCGTGTTCGAGAGGAAGCAGAAGGAGCTGGAGTCGGCCTCCTCTTCCACCGAGCGAGACCGTCTACAGGAGGAACTGGAGGAGGCCAAGGACAAGGCGCGGCGGCGCTCCATTGGGAACATCAAGTTCATCGGGGAGCTGTTCAAGCTGAAGATGCTGACGGAGGCCATCATGCACGACTGCGTGGTCAAGCTGCTGAAGAACCACGACGAGGAGTCTCTGGAGTGCCTGTGTCGGCTGCTCACCACCATCGGCAAGGACCTGGACTTCGAGAAGGCCAAGCCTCGCATGGATCAGTATTTCACCCAGATGGAGAAGATTGTGAAGGAGCGCAAGACCTCGTCCCGGATCCGCTTCATGTTACAGGACGTGATCGATCTCAGGCTGAACAACTGGGTGTCTCGGAGGGCAGACCAGGGCCCCAAGACCATCGAGCAGATCCACAAGGAGGCCAAGATCgaggagcaggaggagcagAGGAAGGTCCACCAGCAGCTGCTGTCCAAGGACAAGCGGAGACCAGTGGTGCAAAGAGAAGAGACCTGGAACACTGTGCCCATGACGAAGAACAGCCGCACCATCGATCCCAGCAAGATCCCCAAGATCTCCAAGCCAACCATAGATGACAAGATCCAGTTGGGGCCCAGAGCACAGCTGAGCTGGGGCAAGGGCAGCAGCGGAGGGGCAAAAGCCAGTGAGTCAGATTTGTCCCGCTCCAGTACGACCAGCTTGAACCGGTTCTCCGCCCTCCAGAATACGCAGCCCCAGGCCGCCACTCCCCCGGCACCCGCTTCGGACTTCGACGCGCGGAGAAATCTGAGCGGACGGAGCAGCACGGGGCGCGAGAGGAATGACAAGCCCGCGACGCCCTCCCCCAACCGGCCTGGCCCCTTCGCGCGGGGGAGCAGCAGCAAGGAGCTGTTGGAGGCCCAGGCCCAGGAGGAGCAGCAGAGGCGTGAGGTGCTTGAGGCGGTCAAGCTGCTGGCCCTGGCCAAGGAGAAGGCCGAGGCAGAGCGCAGCCGTGCGCGGGAGAGCGGGAAGCCCGAGGCGCCAGGATCAGTCACCGCAGAGAAGCCCACCTTAtcggaggaggagatggagaagaaATCTAAATCCATCATCGACGAGTTCCTGCACATCAATGATTATAAGGCGAGTTTCTGCGCAGAGTCTGACTCCTCTGaactctgtgtgcgtgtgcaggaGGCGGTGCAGTGCGTGGAGGAGCTCGACCAGCCCGCTCTGCTGCACGTGTTCGTCCGGGTGGGGGTGGAGTCCACGCTGGAGAGGAGTCAGATCACACGAGACCACATGGGGCAGCTGCTGTTCCAGCTGGTGCAGGCGGGAACCCTGTCCAAGTCCGAGTTCTTCAAAGGGTTCGCGGACACGCTGGAGTTTGCGGACGATATGGCCATCGACATTCCCCATATATGGCTGTACCTCTCGGAGCTGGTGAACCCCATGTTCCGGGAAGGAGGAATCTCTATGAGAGAATTATTTAcTGAATTTAGCAAACCTTTACTTCCTGTAGGAAGAGCTGGGAAATTATTTTCTGACATACTGCACCTACTATGCAAACAAATGAGCCATAGGAAAGTGGGGGCCTTGTGGAGGGATTCGGGCCTGAACTGGGCAGACTTCCTTCCAGAGGGAGAAGATGTATACAACTTTATCTCTGATGAGAAACTACAGTTCACTATATCGGACTGCTCGAGTCCCACGGAAGCCCTTTCGAAGAGAGAGCTTTCCCCCGAGGACCTCAACAAGCAATTCGAGAAACTCCTCCTGGAGGACATCGCTAGCGACGAACAAATCTTCGACTGGGTAGAGgcaAATTTAGATGAATCTCAGATGAGTTCCCCAGCATTCCTTAGAGCTTTAATGACCGCTGTGTGCAAGGCTGCAGTGAAAGGTGAGAGCACCGCGTGCCGCGTGGACACCGCCACCATCCAGAGGAGATTGCCGGTCCTACTCAAGTACCTTAACTCAGATACTGAGAGACAATTGCAAGCACTTTATGCACTTCAAGCATTGATAGTTAAACTTGATCAGCCTCCCAATTTGCTGCGGATGTTTTTCGACTGTTTGTACGATGAAGACGTGATCTCGGAAGACGCTTTCTACAAGTGGGAGACGAGCAAAGACCCTGCCGAGCAGCTGGGCAAGGGCGTGGCTTTGAAATCGGTCACGGCCTTCTTCACCTGGCTGCGAGAAGCAGAGGAGGAGTCGGAGGATAATTGACGAGAGGGGGAGGCCGTCTTCGCCAATTAGTGCAGAAACGCCAATTGTTGCAGAGAATGAACTAAAACGTAAAAccggaaaaacaaacaaatgcacagataGGAGGAGGTGGAAGACGGAACAACAACTGCGGTTGAAATATTATGGTACGGTTGTGAGAAGTACGGCGATTTTTGAGTTTGAATTCATGGGCGGGAGCACtaaacacatgtattatttatagaaaatatttttgttttaaattttaaaactttttctttttgttactttttaagAGACATTAAAACCAATTTCtgtgcaacaaaaacaaataataggtTCTGAactctttaatttattatttttttaaggactGCAAATACGGAAGTTTATTTAACGTTTGCAGATGCTCGAAACTCGGAGAAGAGCGACCACGAcggtaaaaaaataatagtgaaaCAGAAATAGCCCCCCTGGATTCCAAGTTTGGTTGAAAACAGGGTAATTAA

Function

GO: NA

KEGG:

id description
K03260 EIF4G; translation initiation factor 4G

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002138 True 7244 mRNA 0.54 33 4602406 4636492

Neighbor

gene id symbol gene type direction distance location
AMCG00002139 NA coding downstream 2292 4594152 ~ 4600114 (-)
AMCG00002136 NA coding downstream 23234 4570976 ~ 4579172 (-)
AMCG00002132 glut1a,LOC106583009,LOC106565867,LOC107569806,LOC107666081,LOC107549315 coding downstream 179130 4414282 ~ 4423276 (-)
AMCG00002131 NA coding downstream 349009 4220002 ~ 4253397 (-)
AMCG00002120 mrps16 coding downstream 655851 3945137 ~ 3946555 (-)
AMCG00002137 NA coding upstream 14803 4651295 ~ 4673352 (-)
AMCG00002141 NA coding upstream 104997 4741489 ~ 4747439 (-)
AMCG00002142 NA coding upstream 112676 4749168 ~ 4752332 (-)
AMCG00002144 lactbl1,LOC106582988,LOC106565891 coding upstream 160897 4797389 ~ 4811362 (-)
AMCG00002154 dhrs3,LOC106582983 coding upstream 564926 5201418 ~ 5214408 (-)
G121039 NA non-coding downstream 33112 4567439 ~ 4569294 (-)
G120975 NA non-coding downstream 514988 4087108 ~ 4087418 (-)
G120914 NA non-coding downstream 898042 3700492 ~ 3704364 (-)
G120853 NA non-coding downstream 1061580 3538762 ~ 3540826 (-)
G120849 NA non-coding downstream 1065881 3535822 ~ 3536525 (-)
G121111 NA non-coding upstream 80100 4716592 ~ 4722181 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding upstream 474110 5110602 ~ 5116017 (-)
G121152 NA non-coding upstream 491546 5128038 ~ 5137006 (-)
G121188 NA non-coding upstream 591182 5227674 ~ 5228131 (-)
G121271 NA non-coding upstream 1221509 5858001 ~ 5861642 (-)
G120993 NA other downstream 382529 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 815862 3784236 ~ 3786544 (-)
G120907 NA other downstream 886154 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 1135945 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 1416053 3173505 ~ 3186353 (-)
AMCG00002167 NA other upstream 1339233 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 3190149 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 4972258 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 5120933 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 5194027 9830519 ~ 9833224 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_07231558_07266828 EIF4G3, EIF4G3B coding CI01000001 null 7231558 ~ 7266902 (+)