AMCG00002139


Basic Information

Item Value
gene id AMCG00002139
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4594152 ~ 4600114 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002139
CCCTACGCTGGGAGGCGTGGCCGCGTAGCTGATCAAATTCTAAATAAAGGAGAAGACAGtttgaatacaaacaaatacatcacgCTCAAGAAAGGTCTCCATCATGCCTATTCGCCGCGCTGCTGGGACCCCGCCCCAGGAAACGCCCCCCAAGAACCCCCCAGCAGGAGAGCCCGACGCCAGCTCGGAGGAATCCGCCTCCACCGGGGAGGAGCAGGAGAGCGAGGCCCCCGCTGCGGCGGCGCCCCCAGCCGAGGGAGAGGCGAACGCAGAGAGTGAGAAGGCACAGTCGACCGCGGAGCAAGGGGACAAGGAGAAGGAACCAGCCGAAGAGCCGAAGAAAGAGGAGAAAGATGTTGTGAAGGAGAAAGGGAAGAAGGTGAAAAGAACCATCCCAGCCTGGGCCACCATGTCCGCCAATCAGCTAGCCCGCTCCCAGAAGAAgtcccacctctctctctacatCCGGCCCAAGATTGATGAAATCCTCACCGAGGCCATACAGGCCTGCTTCCAGAAAACCGGAGCTTCAGCCTTCGCCGTCAGAAAGTACATCCTGAAGAAGTATCCGTCGCTGGAGCTGGACCGGAGGGGCTACCTGCTGAAACAGGCGCTGAAACGCGTGCTGCAGAGGGGCGCCATCAAGCAGGTGAAGGGGAAGGGCTTCTCTGGGAGCTTCACGGTGGTCAACAACAGCAAGAGATCCAGGAAGAGAGGCTCAACGTCGCTGGAGCCCACGGAGAAGCTGGGGGACGCCCTGCCCCTGATCTTCACACGCCTCTGCGAACCCAAAGAGGCCTCCTACCGCCTCATCAAGAAATACGTGGAGCAGTATTTCCCCAAACTCAAAGTGGACAGCAGACCCCAGATGCTGAAGAACGCCCTGCAGAAAGCAGTGGAGAAAGGGCAGCTCGAGCAGCTCACCGGGAAAGGGGCGTCCGGAACCTTCCAGCTGAAGAGGGCGGGGGACAAGCCCTTGCTGAGCGGCGCGGGGCTCGAGCAGGCCATCCTCTGTGCCATCACCGCCATGAATGAGCCCAAGACCTGCAGCACCACGGCCCTCAAGCGCTTCATCCTGGAGAACAGCCAGGGGGGCAAGGTCAGCCTGCAGGTGAACAACCTGAAACGGACCTTGCGGCGCTGCGAGATGATTGGGTGGATGGAGCAGATCTCCGGCAAGGGTTTCAACGGCTCCTATCAGCTCTGCTTCCCCTACTACCCCAGCCCCGCCACACTGTTCCCCGACAAGCAcaaggaagaggagaaggagaaggaggaaaagaaaatgaaagtgaaagtggAAGAGGACTCGTCTGAGGAAGAGGagtctgaggaggaggaggacgagtcGTCTGAGGAGGAAACATCTGACTCGGAGGATgagccccctccccccaagaAAAGGCCCGTGCAGAAGAGACCCCCCCCCAAGGTGCGCGCCCCGCTGCCCCCCAAGAGGCGCCGTCCCGCGGGCAAGAGCAGGAGCACGACGGCCCAGAAGGCGAGGGCGCCGGTCTACTCGCCTAAAGCCAAGCGCACGGCGCCTGCCAAGAAGCCTGCGCCGGTGAAGAAAGCGCCTCCACCGCCGCCACCCCCCAAGAAAGCGCCGCCCCCCGCCCCGGTCAAGGccgccccgcccccccccaTCAAGGCACCCCCCCCAGCCAAGAAGCCCACCCCCGCCAAGAAGGCCGCCCCGCCCAAGAAGCCCAAGACGCCGGTGTCCAAGAAGATGACGAGCCGCGCCCCCAAGAAGTCCCCGGCCAAGAAGACGGCGCCCAAGCCGGCGGTGAAGGCCAAGCCGGCGTCCCGCAAGTCCCAGCGGACAAGGAAATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002139 True 1837 mRNA 0.62 12 4594152 4600114

Neighbor

gene id symbol gene type direction distance location
AMCG00002136 NA coding downstream 14980 4570976 ~ 4579172 (-)
AMCG00002132 glut1a,LOC106583009,LOC106565867,LOC107569806,LOC107666081,LOC107549315 coding downstream 170876 4414282 ~ 4423276 (-)
AMCG00002131 NA coding downstream 340755 4220002 ~ 4253397 (-)
AMCG00002120 mrps16 coding downstream 647597 3945137 ~ 3946555 (-)
AMCG00002122 NA coding downstream 673811 3919233 ~ 3920341 (-)
AMCG00002138 NA coding upstream 2292 4602406 ~ 4636492 (-)
AMCG00002137 NA coding upstream 51181 4651295 ~ 4673352 (-)
AMCG00002141 NA coding upstream 141375 4741489 ~ 4747439 (-)
AMCG00002142 NA coding upstream 149054 4749168 ~ 4752332 (-)
AMCG00002144 lactbl1,LOC106582988,LOC106565891 coding upstream 197275 4797389 ~ 4811362 (-)
G121039 NA non-coding downstream 24858 4567439 ~ 4569294 (-)
G120975 NA non-coding downstream 506734 4087108 ~ 4087418 (-)
G120914 NA non-coding downstream 889788 3700492 ~ 3704364 (-)
G120853 NA non-coding downstream 1053326 3538762 ~ 3540826 (-)
G120849 NA non-coding downstream 1057627 3535822 ~ 3536525 (-)
G121111 NA non-coding upstream 116478 4716592 ~ 4722181 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding upstream 510488 5110602 ~ 5116017 (-)
G121152 NA non-coding upstream 527924 5128038 ~ 5137006 (-)
G121188 NA non-coding upstream 627560 5227674 ~ 5228131 (-)
G121271 NA non-coding upstream 1257887 5858001 ~ 5861642 (-)
G120993 NA other downstream 374275 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 807608 3784236 ~ 3786544 (-)
G120907 NA other downstream 877900 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 1127691 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 1407799 3173505 ~ 3186353 (-)
AMCG00002167 NA other upstream 1375611 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 3226527 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 5008636 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 5157311 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 5230405 9830519 ~ 9833224 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_09851578_09857742 HP1BP3 coding CI01000306 null 9851227 ~ 9858552 (+)