AMCG00002141


Basic Information

Item Value
gene id AMCG00002141
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4741489 ~ 4747439 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002141
GACTGTCTGATCAACTTATACGGACACTACAGATTAGACCAAACGAGtgaaaaatgaaagcttttCCAGTTTTCCTCCTGTGTTCCTGCTTCGTGTGGAACTCCCAAAGTGTGACGGTCGTGGATGGCAATTTCGCCTTCCCCCTGGACACAGTGATGCAGCTGAAGTGTCTGATGGACGGTGACATTGGGACAAACCCTCGCTTGGCACAAACCAGCGCTGCGGTGATCTGTGCCAACCCCGCTCTGCCCGAGGACTTCCGGCCTGTGTGCCAGAGCCAGGGGGCAGATCTGGTTTTCTCCCGACTGGAGTTGTTGTATTGTTCCTAATGACCTACACTGCGGGCAAACACCCCCACAATGGGCTTAATCATTTCCCAAGCCAGCCAGGTAAAATTATGCTATACACAGGTGTTGCCTCACTGAAAGGTCAGACAGAGAAGTGATAAGAACAAATAAAGAGACTGACGGCGTCCCAGAGTCGTAAACTCACAGCACACAAGTGACAAATTCAAATGATATAGATATAGAGGAGACCATCAGTGTGAGCGCTCTCTCAAAATCAGGTCGCCAGTAAAACATGTGAATGTTTATctgattattgtattgttactgaatgacaaaatggaaatgtgtcaCTGGGTGTAACGAGTCTTAAAGCTCAAGCAGCCTGGCATTGTGCGTCCTCAGCCACAGAGACGACCCCATTCGAAGAAGAAAAGACCGCAAAGCCTGTCACAAGTGTGTCGTGACCCAGAGAACCATTCACTTCAGTGTCCATTCATTTCCACagctattttatatatatttatattctttcaGAGAAGCTATGAACAAGAATCTTCTGAATAGAAAGTCTAGCAAGCAAAAGTCTCCCTGAGTGCCATATAACACTGAACGTTGGTGTAACATTTAGACTgctgatgttttatttctggGAGGATTTAGAGTAGGgcgaatacatttttatgatgatgaCGATGGTGATGCTTATTAAACTGTATGAAACAATTTAATCCCTCATGAATCATCCCTGAATTCAATTCGTTATCCCGGGCTAGCACAGAGCAGAGGTCAAACCCAACCTAAATtatctgattaaattaatatacatagAATGGTACAATGTCATATATATGTGATATTTCCTTCTGTTCCAGCGAAGGTGACGACCCAACCTGACCTCTGTGAAATCTGTGCGAACGCTGCTTGCACTGGATGTCTATAAATGGTTTGTTGCCGTCCTTCCCTTAGGACATCAGCTACACATGTCCTGGGAATCTGCCTGCCCTGCAGACACACCAAACTCAGCGATTCCTCTACAGACAGTTTAACTGAATCATCATGTAATCTCCATTCCCAGTGATCAGCCTGCTTTGCTTAATCCAGACACCAGGGCCAGCTCTGTGTGCGTTCTGGACACATCTGAAATGTGTTCTGTACAGCACAGTGGACACGAACTGGGAAGCAGGATGTAGTGTCCAAGCTGTGTCCAACATATTCTCACTAATGGAGCTCTGTCCAATGGAGCTGGGTATCCCAAACACCACCGGAAATGGCAATGGTTTGAGGATCCCAAGCAGGaaaagctttctttaaaaaaaaaaaaaaagctagatGTTAGCCCGGCTTTCcattactttctttaaaatgctgTGTAGATAACCCTTAGAACTGTGTAAAAGATAGCAACGAATAAGAAAAAGCTGCAGATAACCCTTTGATCCTGAGAAGAGATTGTGCACAGCCTTCTCAGATAGCTCTAAATGAAAATCAGGTGTTACCGAATCAAGATCCTGAGAAACCACAATTAGAAAATTATCTACGAGAAATTCTTAGTTTTTTATCGTTGACTGCCACACTCACTTggggtttgtttttcctgaagATGGAAGCACAGACTGTTGCCAAGTGTTTCACGCGTACTCAAGGAGGATCTGCGCTGGCGATTTAACTGGCGGCTTGTTTTCGCTCCTTACAAGTACATGCTGACAATAGATGTTTTGTATATGAcccttattattttgtgtgaagCTGTAAAGTTATAATGGAGTAATAATTAACTCTAGACAGAGATAAACTTCAATGACTTCAAtgatacagaaaatacacaaaccaATCGCACCCACTGTTGATAAACATTGCAGCACGTTGTTCCAGAGAAGGGTCACGCGGTGCGGTGTGTGCTCTTGTTgtgtgtggtgttgttttttctggtaGAAGTAACAGTGGAAGCAAACATATCAAAGCAATCAAAATAAGAGTTGTCTGTCTCTAATAAAACCATTTTATCAtgcaataacaatataaatgtttttaatacaatataaagcaTGAATTCTCCACATACATGTGAAGAATGTGAGTCTATGAATATAGTTCTGTGAACGGTGAGtgtatgtacgtgtgtgtgtttgtgtgcttgtgcgTGTGCAGGTATActcaacacaaatataaacacaacatgtaaagtgttggtcccatgttccACGAGGTGAAATTAAAGATCCCAGTCATTTTCTtacacacaaaaagcttatttctctcaaattgggtgcacagttttgtttacatctctgttagtgagcatttgtCCTTTGTCCATATAACCCATCCACCTGACAGACAGGTGTGGcagatcaagaagctgattaaagtCTGATCATTGTCCCTTTATTTATGAttgtatttcaattgactgacatgcttatatgaactgtaactcagtacaatattttaa

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002141 True 2739 mRNA 0.42 3 4741489 4747439

Neighbor

gene id symbol gene type direction distance location
AMCG00002137 NA coding downstream 68137 4651295 ~ 4673352 (-)
AMCG00002138 NA coding downstream 104997 4602406 ~ 4636492 (-)
AMCG00002139 NA coding downstream 141375 4594152 ~ 4600114 (-)
AMCG00002136 NA coding downstream 162317 4570976 ~ 4579172 (-)
AMCG00002132 glut1a,LOC106583009,LOC106565867,LOC107569806,LOC107666081,LOC107549315 coding downstream 318213 4414282 ~ 4423276 (-)
AMCG00002142 NA coding upstream 1729 4749168 ~ 4752332 (-)
AMCG00002144 lactbl1,LOC106582988,LOC106565891 coding upstream 49950 4797389 ~ 4811362 (-)
AMCG00002154 dhrs3,LOC106582983 coding upstream 453979 5201418 ~ 5214408 (-)
AMCG00002153 NA coding upstream 504936 5252375 ~ 5254786 (-)
AMCG00002155 igsf21,LOC108438574 coding upstream 516568 5264007 ~ 5286782 (-)
G121111 NA non-coding downstream 19308 4716592 ~ 4722181 (-)
G121039 NA non-coding downstream 172195 4567439 ~ 4569294 (-)
G120975 NA non-coding downstream 654071 4087108 ~ 4087418 (-)
G120914 NA non-coding downstream 1037125 3700492 ~ 3704364 (-)
G120853 NA non-coding downstream 1200663 3538762 ~ 3540826 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding upstream 363163 5110602 ~ 5116017 (-)
G121152 NA non-coding upstream 380599 5128038 ~ 5137006 (-)
G121188 NA non-coding upstream 480235 5227674 ~ 5228131 (-)
G121271 NA non-coding upstream 1110562 5858001 ~ 5861642 (-)
G121274 NA non-coding upstream 1124229 5871668 ~ 5874136 (-)
G120993 NA other downstream 521612 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 954945 3784236 ~ 3786544 (-)
G120907 NA other downstream 1025237 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 1275028 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 1555136 3173505 ~ 3186353 (-)
AMCG00002167 NA other upstream 1228286 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 3079202 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 4861311 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 5009986 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 5083080 9830519 ~ 9833224 (-)

Expression


Co-expression Network