AMCG00002142


Basic Information

Item Value
gene id AMCG00002142
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4749168 ~ 4752332 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002142
TTTCACTGTAGACACAGCAGGGGGCTGCGTTTATGGGCAGGAATGAGACCTGACACAGATGAGatcactgaaaacacaaattcCCCTTTATGACACCATTAAACTTCAATGCCATAGCTATCCACTAACCATTCGGAAAGCCTCCGTCCATAACCGTTTAGCCAATCGTGCGCTTACAAGGTGATCGAGTAATCTGCCAGACTTTAAAAGGAGGGAATGAGCTGGCGGAGGGCAGAAACATCAACAGAAACAGCTTTGTTGAAATACACAAGCAGGACAAACAAAGTCACGAGAAAGACTAACCGGAGCGTCATCATGAAGTGTGTGCTGGCAACTGTGTTCTGCCTCGTGGCACTTTGCGTGTTTTCAGATGCAGTGCAGGTGAAAGAAGGGGATTTCACTTTCTCCTTGGAGGCTGTGAAGAAGCTGAAGGAGGTGATGGACGCCAGTGCTGTGAAGAACCCCCGTCTGGCCAAGACAAGCTTGCCAGCCTCCTGTTCCGACCCAGACCTGCCTGCGGAGTTCCTGCCCTTGTGCCAGAGCTCACGACCCGGCATGTCCTTCTACAGACTGGCTCTCTTGGCAGAGGAGCCTGATGTCTGTGAGATCTGTGCCTTCGCTGCGTGCACCGGCTGCTGAGCTGTGAACGCTCCTGATCCTTAAagactatatattatatatatacatttgtgtaaacttgttttaatgcatGGTTTGTGTATGTCCTGCTATTAGTTGGTAGGTACATATTTGGATAGTAAACACCTATTGAAAACACCACCAGTCTCAGCACGGCACAACCACAACCAAATCTTTATGGAGAAAAACAGatattacaaagaaaaacactgacactTTATAAAAGATATATTccctaaaataaatgtgtacatttgtatcAATCCTCATTCTGTTCCCTGAGCCCAAGCCCAAGTAAAAAggaaagttgtattttttacaagtatgttttcttgtatttttcgTTCTTCTGGATTGTGTCCTTAACAATGCTgttcaaaactattttctgCTGTTGAAATGTCAGCTTTGACCTACAGTTACTGTAAGTTACAGGGCAGGTTGTATCTGCTTAACATTGTCTTTGAAAAAGCACACCTACTGTCACTATTTCTTCACTGTTTTGTCAAAGTTACAGTGGCTGCAGTTTCTCACAAGtctttattcttatttaaagtGGTTCCaagaatttcatttttttacaatatcAATGGATGTGTTATATGTTTTGTATActtaataattcatat

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002142 True 1268 mRNA 0.42 3 4749168 4752332

Neighbor

gene id symbol gene type direction distance location
AMCG00002141 NA coding downstream 1729 4741489 ~ 4747439 (-)
AMCG00002137 NA coding downstream 75816 4651295 ~ 4673352 (-)
AMCG00002138 NA coding downstream 112676 4602406 ~ 4636492 (-)
AMCG00002139 NA coding downstream 149054 4594152 ~ 4600114 (-)
AMCG00002136 NA coding downstream 169996 4570976 ~ 4579172 (-)
AMCG00002144 lactbl1,LOC106582988,LOC106565891 coding upstream 45057 4797389 ~ 4811362 (-)
AMCG00002154 dhrs3,LOC106582983 coding upstream 449086 5201418 ~ 5214408 (-)
AMCG00002153 NA coding upstream 500043 5252375 ~ 5254786 (-)
AMCG00002155 igsf21,LOC108438574 coding upstream 511675 5264007 ~ 5286782 (-)
AMCG00002158 NA coding upstream 1008502 5760834 ~ 5786032 (-)
G121111 NA non-coding downstream 26987 4716592 ~ 4722181 (-)
G121039 NA non-coding downstream 179874 4567439 ~ 4569294 (-)
G120975 NA non-coding downstream 661750 4087108 ~ 4087418 (-)
G120914 NA non-coding downstream 1044804 3700492 ~ 3704364 (-)
G120853 NA non-coding downstream 1208342 3538762 ~ 3540826 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding upstream 358270 5110602 ~ 5116017 (-)
G121152 NA non-coding upstream 375706 5128038 ~ 5137006 (-)
G121188 NA non-coding upstream 475342 5227674 ~ 5228131 (-)
G121271 NA non-coding upstream 1105669 5858001 ~ 5861642 (-)
G121274 NA non-coding upstream 1119336 5871668 ~ 5874136 (-)
G120993 NA other downstream 529291 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 962624 3784236 ~ 3786544 (-)
G120907 NA other downstream 1032916 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 1282707 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 1562815 3173505 ~ 3186353 (-)
AMCG00002167 NA other upstream 1223393 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 3074309 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 4856418 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 5005093 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 5078187 9830519 ~ 9833224 (-)

Expression


Co-expression Network