AMCG00002144 (lactbl1,LOC106582988,LOC106565891)


Basic Information

Item Value
gene id AMCG00002144
gene name lactbl1,LOC106582988,LOC106565891
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4797389 ~ 4811362 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002144
ATGGGGGACACCAGCATGTTTCTTCAGACCACTGGGGGTGTTCGAGGATTAACCAAAGCCCTCAAGATGGAGGTGAAATGGACCCAGCTGGGAATGGTTTTCTTTCTGCTGCTGTCCATTGTCATGACAGGTTGTTTTCTATGGCAGTACCAGTTGCCGAAGATAGAACCAGATTACGGGATGTCAGGTAATGAGAACTCGGAACAAATGTGCCCCCGGTTCCCAGAACCCACCCCCCTTGAGCATCCCATTCCTTCTCTCAAAGAGGCACTGGAAAAGGTGGATATGCTTCTCCGGCACAGTATTCACGCCACCAGCCTTCCGTCGCTGTCGGCCATTGTGGTTTTCAACGACACCGTCCTGTGGACTGGAAACTTCGGCAAGAGAAATGGATCTGATCCCTTTTCCTCTCCACCCAATGAGTACACCATCTACAGGATCGCCAGCCTGTCCAAGATCTTCCCCACACTGATGCTGTATCGCCTGTGGGAGGAGGGCAAGGTCAGCTCCCTGGATGACCCTCTGGAGAAATACATTGAGAACTTCACCATCAAGAACCCTCTGGGGAAATCCCGGGACTCGGAGCTGAAGTACGTCACCGATGGGCTGATTTTCCTAGACAGCGGCGAGGTCCAGATCCGATCCTCATCCGTCACACTGCGCAGGATGGCCAGCCAGCTCTCCGGGCTGCCCCGGAGACTGAGAGCAACCAACCTCTTGTGGAAGGGAAAGACGCAGACCGCCCTCAGTTTGCTGCAAGATGATGTGCTGGTGGCTGACCCAGGTACCAGATGCCATTACAGTAACCTGGCCTTCTCCCTGCTGGCTCACGTCTTGTCAGAAAAAGTGGTGGGCTCTGACTACCAGCGCTGGATCTCTGACAACATCCTGGACCGGCTAGGAATGGAGGACACGGGCTTCGACATCACCCCTGCTATTCAGAATCAGATGGCGGTGGGCTTGTACACAAGTGGGCAGCCAGCGCCCCTCTATGATCTGGGCTGGTACCGTCCCTCAGGGCAGATGTACTCCACAGCTGCGGACCTGGCCAAGCTTGCCATGGTGTTTCTGGGCGCCTACCACCGCAAGCTCCTGGAGCCAGACACCCTGAAAACCATGCTGACGCCTCTCTTCCGCTGCGACAAGGATTACTTCGCCAACCGGACAGGCACCCCTTGGGAGGTGAACGAGCAACTGGGCTATGAGGTGGTGCGCAAAGATGGAGATCTGGACGGATACTCTGCCACCTTCTCCTTGGTACCCCGGCTAAAGGTGGGCTTGGTGGTTCTGATGGCGGGCACCAGGCCACAAGATGAAGATGTGGTGGCTAAAGCTTACAACTATCTTATCCCCGCTATGGAAACAGCCTTCCGAGAAGCCAGTCGTATCCTGACACCGCCCCCCAATCCATCCCCTTATGTTGGCTTCTATACCTATGGCAACATCACCTTCTATGAGATCAAAACCGGCTCAGTTGGAGTCCTGATCATGCAGCAGTTTGGTCCCCACATCGAGGATCTGATCCCCGAAAGGTACAGGACAATAAAGCTCCACTACCTGGAGGACAGGGTCTTCCAGGTTGTCTTCGAGAAGGAATACCCCTGTGTCTTACGAGTCAGCACCGCCTCTGTTTCTTTGGAAGCTCAGGACGGGCAGCTCTTTAACTTTTACCCCTTCGACAAGAAGGGCCAGTCTCCGGGCTTCGATGCCCCAGGCCTCAACACCTATAATGTGGTCCGGATTCCCCATAGACCCACGTTCAACACCTAA

Function

symbol description
lactbl1 Orthologous to human LACTBL1 (lactamase beta like 1).

NR:

description
PREDICTED: putative beta-lactamase-like 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002144 True 1770 mRNA 0.55 7 4797389 4811362

Neighbor

gene id symbol gene type direction distance location
AMCG00002142 NA coding downstream 45057 4749168 ~ 4752332 (-)
AMCG00002141 NA coding downstream 49950 4741489 ~ 4747439 (-)
AMCG00002137 NA coding downstream 124037 4651295 ~ 4673352 (-)
AMCG00002138 NA coding downstream 160897 4602406 ~ 4636492 (-)
AMCG00002139 NA coding downstream 197275 4594152 ~ 4600114 (-)
AMCG00002154 dhrs3,LOC106582983 coding upstream 390056 5201418 ~ 5214408 (-)
AMCG00002153 NA coding upstream 441013 5252375 ~ 5254786 (-)
AMCG00002155 igsf21,LOC108438574 coding upstream 452645 5264007 ~ 5286782 (-)
AMCG00002158 NA coding upstream 949472 5760834 ~ 5786032 (-)
AMCG00002157 LOC106565901,LOC108438575,LOC104956748,LOC102783840,LOC107751159 coding upstream 993480 5804842 ~ 5827525 (-)
G121111 NA non-coding downstream 75208 4716592 ~ 4722181 (-)
G121039 NA non-coding downstream 228095 4567439 ~ 4569294 (-)
G120975 NA non-coding downstream 709971 4087108 ~ 4087418 (-)
G120914 NA non-coding downstream 1093025 3700492 ~ 3704364 (-)
G120853 NA non-coding downstream 1256563 3538762 ~ 3540826 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding upstream 299240 5110602 ~ 5116017 (-)
G121152 NA non-coding upstream 316676 5128038 ~ 5137006 (-)
G121188 NA non-coding upstream 416312 5227674 ~ 5228131 (-)
G121271 NA non-coding upstream 1046639 5858001 ~ 5861642 (-)
G121274 NA non-coding upstream 1060306 5871668 ~ 5874136 (-)
G120993 NA other downstream 577512 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 1010845 3784236 ~ 3786544 (-)
G120907 NA other downstream 1081137 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 1330928 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 1611036 3173505 ~ 3186353 (-)
AMCG00002167 NA other upstream 1164363 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 3015279 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 4797388 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 4946063 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 5019157 9830519 ~ 9833224 (-)

Expression


Co-expression Network